Raw RLU HIV-1 RC observations. A, All replicates for the 355 patient samples for each day of observation. There were 4 replicates per day per patient. B, Replication kinetics measured as the median value over the 4 replicates for each patient and day. A and B, The x-axis depicts the day when the replication measurement was acquired postinfection, and the y-axis represents the RC value in RLU in log scale. C, The violin plot depicts the distribution of the derived AUC values in log scale for the 355 samples. The light box indicates the median and interquartile range of the AUC values, the vertical line the 95% confidence interval. Abbreviations: AUC, area under the curve; HIV-1, human immunodeficiency virus-1; RC, replication capacity; RLU, relative light unit.