Fig. 12.
Posterior means and 95% HPD CIs for the 27 parameters in the MSC model on species tree 1 (fig. 5) in analyses of the ratite dataset under different clock models. The independent-rates model (clock 2) was assumed, with four prior settings concerning the distribution of overall rates (μi) and rate variance parameters (νi) among loci (iid vs. dir) and concerning the distribution of the branch rates (G vs. LN). Each panel shows four replicate runs for each of the four clock model settings.

Posterior means and 95% HPD CIs for the 27 parameters in the MSC model on species tree 1 (fig. 5) in analyses of the ratite dataset under different clock models. The independent-rates model (clock 2) was assumed, with four prior settings concerning the distribution of overall rates (μi) and rate variance parameters (νi) among loci (iid vs. dir) and concerning the distribution of the branch rates (G vs. LN). Each panel shows four replicate runs for each of the four clock model settings.

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