H3K9me2 signal deposition induced by H. schachtii in wild-type plants is primarily mediated by SUVH5 and SUVH6, and contributes to gene expression changes. A, Overlaps between H3K9me2-depleted genes in suvh5 or suvh6 and H3K9me2-enriched genes in Col-0 plants. Note that of the 1,180 genes exhibiting H3K9me2 deposition in Col-0, 1,129 genes exhibited H3K9me2 depletion uniquely in suvh5 (5 genes), or in suvh6 (892 genes), or in both mutants (232 genes). B, Overlap between DEGs identified in infected wild-type Col-0 plants and the 1,129 genes showing H3K9me2 deposition in infected wild-type plants and established by SUVH5 or SUVH6. The 175 overlapping genes are listed in Supplemental Data Set S12. C, Overlap between syncytium DEGs (Szakasits et al., 2009) and the 1,129 genes showing H3K9me2 deposition in infected wild-type plants and established by SUVH5 or SUVH6. The 290 overlapping genes are listed in Supplemental Data Set S13. D–F, Overlaps between DEGs and genes showing differential H3K9me2 deposition in suvh5 (D), suvh6 (E), and Col-0 (F).