Fig. 3
Unsupervised analysis of the methylation-profiled cohort. (a) t-SNE analysis of 1258 methylation-profiled tumor cases colored by final diagnosis and shaped by classification scores as indicated in Figure 2a. (b) The classifier scores of the cases diagnosed as DMG-K27 tumors in 2 groups: classic DMG-K27 and AP-like DMG-K27. (c) Cluster heatmap of in-house 18 ANA-PA and 31 DMG-K27 tumors indicating 2 groups of DMG-K27. Tumor types are colored on the top of heatmap, light green: DMG-K27, purple: ANA-PA. (d) H&E stains of Y132, Y217, and Y129 with 25 µm scale bars on bottom left (e) CNV plots on chromosome 13 revealing the common RB1 loss in Y132, Y217, and Y129.

Unsupervised analysis of the methylation-profiled cohort. (a) t-SNE analysis of 1258 methylation-profiled tumor cases colored by final diagnosis and shaped by classification scores as indicated in Figure 2a. (b) The classifier scores of the cases diagnosed as DMG-K27 tumors in 2 groups: classic DMG-K27 and AP-like DMG-K27. (c) Cluster heatmap of in-house 18 ANA-PA and 31 DMG-K27 tumors indicating 2 groups of DMG-K27. Tumor types are colored on the top of heatmap, light green: DMG-K27, purple: ANA-PA. (d) H&E stains of Y132, Y217, and Y129 with 25 µm scale bars on bottom left (e) CNV plots on chromosome 13 revealing the common RB1 loss in Y132, Y217, and Y129.

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