Figure 9
The enrichment significance scores of MMS, MDS, DFVS and NCUA methods in the CSD list by respectively using the (A) LIONESS, (B) SSN and (C) Paired-SSN network constructing methods. The enrichment significant P-value is calculated by using the hyper geometric test [129]. The enrichment score ESg is defined as ESg = −log10(P-value). The red line denotes the significant threshold value ESG = 2. If the ESG for the predicted PDGs is larger than this threshold value, we think that the enrichment result is significant.

The enrichment significance scores of MMS, MDS, DFVS and NCUA methods in the CSD list by respectively using the (A) LIONESS, (B) SSN and (C) Paired-SSN network constructing methods. The enrichment significant P-value is calculated by using the hyper geometric test [129]. The enrichment score ESg is defined as ESg = −log10(P-value). The red line denotes the significant threshold value ESG = 2. If the ESG for the predicted PDGs is larger than this threshold value, we think that the enrichment result is significant.

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