Figure 4
Integration with network information underpins the association of MCE with cell potency. (A) Violin plots of the observed MCE values for NPCs and terminally differentiated neurons (scRNA-Seq data from Wang et al.). P-value derives from a one-tailed Wilcoxon rank sum test. (B) As (A), but now for a random permutation of the expression values over the network, leading to a reduced discrimination accuracy. (C). Comparison of the AUC discrimination measure for the observed case [depicted in (A)] and for 100 distinct permutations. P-value is an empirical one comparing the observed AUC to those from the 100 permutations. (D) MCE (y-axis) is approximated reasonably well by the Pearson Correlation Coefficient (PCC) between the transcriptome and connectivity/degree profile of the network (x-axis). $R^2$ value is given. (E) Boxplots of t-statistics of differential expression between NPCs and neurons (y-axis) against node degree (x-axis), with larger degrees binned into equal-sized groups. Green dashed line denotes the line t = 0. Red line is that of a linear regression. PCC is the Pearson correlation between the t-statistics and node degree. We also give the P-value for the linear regression.

Integration with network information underpins the association of MCE with cell potency. (A) Violin plots of the observed MCE values for NPCs and terminally differentiated neurons (scRNA-Seq data from Wang et al.). P-value derives from a one-tailed Wilcoxon rank sum test. (B) As (A), but now for a random permutation of the expression values over the network, leading to a reduced discrimination accuracy. (C). Comparison of the AUC discrimination measure for the observed case [depicted in (A)] and for 100 distinct permutations. P-value is an empirical one comparing the observed AUC to those from the 100 permutations. (D) MCE (y-axis) is approximated reasonably well by the Pearson Correlation Coefficient (PCC) between the transcriptome and connectivity/degree profile of the network (x-axis). |$R^2$| value is given. (E) Boxplots of t-statistics of differential expression between NPCs and neurons (y-axis) against node degree (x-axis), with larger degrees binned into equal-sized groups. Green dashed line denotes the line t = 0. Red line is that of a linear regression. PCC is the Pearson correlation between the t-statistics and node degree. We also give the P-value for the linear regression.

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