In silico prediction of terminal restriction fragments and phylogenetic classification of cloned 16S rRNA gene fragments
| Class | Order | Family | Genus | Predicted AluI TRF | # of clones |
| Alphaproteobacteria | Unclassified | Unclassified | Unclassified | 66 | 2 |
| Alphaproteobacteria | Unclassified | Unclassified | Unclassified | 72 | 2 |
| Alphaproteobacteria | Rhizobiales | Unclassified | Unclassified | 72 | 1 |
| Alphaproteobacteria | Rhizobiales | Rhodobacteraceae | Thalassobacter | 73 | 1 |
| Bacteroidetes | Uncultured | Unclassified | Unclassified | 73 | 2 |
| Gammaproteobacteria | Legionellales | Coxiellaceae | Coxiella | 74 | 125 |
| Gammaproteobacteria | Unclassified | Unclassified | Unclassified | 74 | 16 |
| Gammaproteobacteria | Unclassified | Unclassified | Unclassified | 74 | 1 |
| Bacteroidetes | Unclassified | Unclassified | Unclassified | 74 | 1 |
| Gammaproteobacteria | Oceanospirillales | Oleiphilaceae | Uncultured | 74 | 1 |
| Gammaproteobacteria | Oceanospirillales | Oleiphilaceae | Uncultured | 82 | 2 |
| Gammaproteobacteria | Pseudomonadales | Moraxellaceae | Acinetobacter | 85 | 1 |
| Gammaproteobacteria | Unclassified | Unclassified | Unclassified | 127 | 1 |
| Alphaproteobacteria | Rhizobiales | Rhodobacteraceae | Roseovarius | 127 | 1 |
| Alphaproteobacteria | Unclassified | Unclassified | Unclassified | 128 | 2 |
| Gammaproteobacteria | Unclassified | Unclassified | Unclassified | 128 | 1 |
| Gammaproteobacteria | Oceanospirillales | Oleiphilaceae | Uncultured | 138 | 2 |
| Alphaproteobacteria | Rhodobacterales | Rhodobacteraceae | Thalassobacter | 139 | 2 |
| Betaproteobacteria | Burkholderiales | Unclassified | Unclassified | 139 | 1 |
| Gammaproteobacteria | Oceanospirillales | Oleiphilaceae | Unculutred | 147 | 1 |
| Gammaproteobacteria | Alteromonadales | Unclassified | Unclassified | 152 | 14 |
| Gammaproteobacteria | Alteromonadales | Unclassified | Unclassified | 152 | 3 |
| Gammaproteobacteria | Alteromonadales | Uncultured | Unclassified | 152 | 2 |
| Gammaproteobacteria | Unclassified | Unclassified | Unclassified | 152 | 1 |
| Gammaproteobacteria | Oceanospirillales | Oleiphilaceae | Uncultured | 152 | 1 |
| Gammaproteobacteria | Unclassified | Unclassified | Unclassified | 152 | 1 |
| Alphaproteobacteria | Rhodobacterales | Rhodobacteraceae | Thalassobacter | 201 | 3 |
| Alphaproteobacteria | Unclassified | Unclassified | Unclassified | 201 | 2 |
| Verrucomicrobia | Unclassified | Unclassified | Unclassified | 201 | 1 |
| Gammaproteobacteria | Oceanospirillales | Oleiphilaceae | Uncultured | 201 | 1 |
| Gammaproteobacteria | Unclassified | Unclassified | Unclassified | 204 | 2 |
| Bacteroidetes | Flavobacteriaceae | Unclassified | Unclassified | 206 | 1 |
| Bacteroidetes | Unclassified | Unclassified | Unclassified | 207 | 2 |
| Cyanobacteria | Chroococcales | Unclassified | Unclassified | 217 | 1 |
| Alphaproteobacteria | Rhodospirillaceae | Unclassified | Unclassified | 221 | 1 |
| Deltaproteobacteria | Unclassified | Unclassified | Unclassified | 232 | 1 |
| Gammaproteobacteria | Oceanospirillales | Uncultured | Uncultured | 234 | 25 |
| Gammaproteobacteria | Oceanospirillales | Oleiphilaceae | Uncultured | 234 | 1 |
| Alphaproteobacteria | Rhodobacterales | Rhodobacteraceae | Thalassobacter | 248 | 56 |
| Alphaproteobacteria | Rhodobacterales | Rhodobacteraceae | Thalassobacter | 248 | 2 |
| Alphaproteobacteria | Rhodobacterales | Rhodobacteraceae | Thalassobacter | 248 | 2 |
| Alphaproteobacteria | Rhizobiales | Rhodobacteraceae | Thalassobacter | 248 | 1 |
| Gammaproteobacteria | Unclassified | Unclassified | Unclassified | 253 | 2 |
| Gammaproteobacteria | Alteromonadales | Endobugula | Uncultured | 273 | 1 |
| Alphaproteobacteria | Rhodobacterales | Rhodobacteraceae | Thalassobacter | 307 | 2 |
| Alphaproteobacteria | Rickettsiales | Uncultured | Unclassified | 352 | 1 |
| Alphaproteobacteria | Rhizobiales | Rhodobacteraceae | Thalassobacter | 391 | 1 |
| Class | Order | Family | Genus | Predicted AluI TRF | # of clones |
| Alphaproteobacteria | Unclassified | Unclassified | Unclassified | 66 | 2 |
| Alphaproteobacteria | Unclassified | Unclassified | Unclassified | 72 | 2 |
| Alphaproteobacteria | Rhizobiales | Unclassified | Unclassified | 72 | 1 |
| Alphaproteobacteria | Rhizobiales | Rhodobacteraceae | Thalassobacter | 73 | 1 |
| Bacteroidetes | Uncultured | Unclassified | Unclassified | 73 | 2 |
| Gammaproteobacteria | Legionellales | Coxiellaceae | Coxiella | 74 | 125 |
| Gammaproteobacteria | Unclassified | Unclassified | Unclassified | 74 | 16 |
| Gammaproteobacteria | Unclassified | Unclassified | Unclassified | 74 | 1 |
| Bacteroidetes | Unclassified | Unclassified | Unclassified | 74 | 1 |
| Gammaproteobacteria | Oceanospirillales | Oleiphilaceae | Uncultured | 74 | 1 |
| Gammaproteobacteria | Oceanospirillales | Oleiphilaceae | Uncultured | 82 | 2 |
| Gammaproteobacteria | Pseudomonadales | Moraxellaceae | Acinetobacter | 85 | 1 |
| Gammaproteobacteria | Unclassified | Unclassified | Unclassified | 127 | 1 |
| Alphaproteobacteria | Rhizobiales | Rhodobacteraceae | Roseovarius | 127 | 1 |
| Alphaproteobacteria | Unclassified | Unclassified | Unclassified | 128 | 2 |
| Gammaproteobacteria | Unclassified | Unclassified | Unclassified | 128 | 1 |
| Gammaproteobacteria | Oceanospirillales | Oleiphilaceae | Uncultured | 138 | 2 |
| Alphaproteobacteria | Rhodobacterales | Rhodobacteraceae | Thalassobacter | 139 | 2 |
| Betaproteobacteria | Burkholderiales | Unclassified | Unclassified | 139 | 1 |
| Gammaproteobacteria | Oceanospirillales | Oleiphilaceae | Unculutred | 147 | 1 |
| Gammaproteobacteria | Alteromonadales | Unclassified | Unclassified | 152 | 14 |
| Gammaproteobacteria | Alteromonadales | Unclassified | Unclassified | 152 | 3 |
| Gammaproteobacteria | Alteromonadales | Uncultured | Unclassified | 152 | 2 |
| Gammaproteobacteria | Unclassified | Unclassified | Unclassified | 152 | 1 |
| Gammaproteobacteria | Oceanospirillales | Oleiphilaceae | Uncultured | 152 | 1 |
| Gammaproteobacteria | Unclassified | Unclassified | Unclassified | 152 | 1 |
| Alphaproteobacteria | Rhodobacterales | Rhodobacteraceae | Thalassobacter | 201 | 3 |
| Alphaproteobacteria | Unclassified | Unclassified | Unclassified | 201 | 2 |
| Verrucomicrobia | Unclassified | Unclassified | Unclassified | 201 | 1 |
| Gammaproteobacteria | Oceanospirillales | Oleiphilaceae | Uncultured | 201 | 1 |
| Gammaproteobacteria | Unclassified | Unclassified | Unclassified | 204 | 2 |
| Bacteroidetes | Flavobacteriaceae | Unclassified | Unclassified | 206 | 1 |
| Bacteroidetes | Unclassified | Unclassified | Unclassified | 207 | 2 |
| Cyanobacteria | Chroococcales | Unclassified | Unclassified | 217 | 1 |
| Alphaproteobacteria | Rhodospirillaceae | Unclassified | Unclassified | 221 | 1 |
| Deltaproteobacteria | Unclassified | Unclassified | Unclassified | 232 | 1 |
| Gammaproteobacteria | Oceanospirillales | Uncultured | Uncultured | 234 | 25 |
| Gammaproteobacteria | Oceanospirillales | Oleiphilaceae | Uncultured | 234 | 1 |
| Alphaproteobacteria | Rhodobacterales | Rhodobacteraceae | Thalassobacter | 248 | 56 |
| Alphaproteobacteria | Rhodobacterales | Rhodobacteraceae | Thalassobacter | 248 | 2 |
| Alphaproteobacteria | Rhodobacterales | Rhodobacteraceae | Thalassobacter | 248 | 2 |
| Alphaproteobacteria | Rhizobiales | Rhodobacteraceae | Thalassobacter | 248 | 1 |
| Gammaproteobacteria | Unclassified | Unclassified | Unclassified | 253 | 2 |
| Gammaproteobacteria | Alteromonadales | Endobugula | Uncultured | 273 | 1 |
| Alphaproteobacteria | Rhodobacterales | Rhodobacteraceae | Thalassobacter | 307 | 2 |
| Alphaproteobacteria | Rickettsiales | Uncultured | Unclassified | 352 | 1 |
| Alphaproteobacteria | Rhizobiales | Rhodobacteraceae | Thalassobacter | 391 | 1 |
In silico prediction of terminal restriction fragments and phylogenetic classification of cloned 16S rRNA gene fragments
| Class | Order | Family | Genus | Predicted AluI TRF | # of clones |
| Alphaproteobacteria | Unclassified | Unclassified | Unclassified | 66 | 2 |
| Alphaproteobacteria | Unclassified | Unclassified | Unclassified | 72 | 2 |
| Alphaproteobacteria | Rhizobiales | Unclassified | Unclassified | 72 | 1 |
| Alphaproteobacteria | Rhizobiales | Rhodobacteraceae | Thalassobacter | 73 | 1 |
| Bacteroidetes | Uncultured | Unclassified | Unclassified | 73 | 2 |
| Gammaproteobacteria | Legionellales | Coxiellaceae | Coxiella | 74 | 125 |
| Gammaproteobacteria | Unclassified | Unclassified | Unclassified | 74 | 16 |
| Gammaproteobacteria | Unclassified | Unclassified | Unclassified | 74 | 1 |
| Bacteroidetes | Unclassified | Unclassified | Unclassified | 74 | 1 |
| Gammaproteobacteria | Oceanospirillales | Oleiphilaceae | Uncultured | 74 | 1 |
| Gammaproteobacteria | Oceanospirillales | Oleiphilaceae | Uncultured | 82 | 2 |
| Gammaproteobacteria | Pseudomonadales | Moraxellaceae | Acinetobacter | 85 | 1 |
| Gammaproteobacteria | Unclassified | Unclassified | Unclassified | 127 | 1 |
| Alphaproteobacteria | Rhizobiales | Rhodobacteraceae | Roseovarius | 127 | 1 |
| Alphaproteobacteria | Unclassified | Unclassified | Unclassified | 128 | 2 |
| Gammaproteobacteria | Unclassified | Unclassified | Unclassified | 128 | 1 |
| Gammaproteobacteria | Oceanospirillales | Oleiphilaceae | Uncultured | 138 | 2 |
| Alphaproteobacteria | Rhodobacterales | Rhodobacteraceae | Thalassobacter | 139 | 2 |
| Betaproteobacteria | Burkholderiales | Unclassified | Unclassified | 139 | 1 |
| Gammaproteobacteria | Oceanospirillales | Oleiphilaceae | Unculutred | 147 | 1 |
| Gammaproteobacteria | Alteromonadales | Unclassified | Unclassified | 152 | 14 |
| Gammaproteobacteria | Alteromonadales | Unclassified | Unclassified | 152 | 3 |
| Gammaproteobacteria | Alteromonadales | Uncultured | Unclassified | 152 | 2 |
| Gammaproteobacteria | Unclassified | Unclassified | Unclassified | 152 | 1 |
| Gammaproteobacteria | Oceanospirillales | Oleiphilaceae | Uncultured | 152 | 1 |
| Gammaproteobacteria | Unclassified | Unclassified | Unclassified | 152 | 1 |
| Alphaproteobacteria | Rhodobacterales | Rhodobacteraceae | Thalassobacter | 201 | 3 |
| Alphaproteobacteria | Unclassified | Unclassified | Unclassified | 201 | 2 |
| Verrucomicrobia | Unclassified | Unclassified | Unclassified | 201 | 1 |
| Gammaproteobacteria | Oceanospirillales | Oleiphilaceae | Uncultured | 201 | 1 |
| Gammaproteobacteria | Unclassified | Unclassified | Unclassified | 204 | 2 |
| Bacteroidetes | Flavobacteriaceae | Unclassified | Unclassified | 206 | 1 |
| Bacteroidetes | Unclassified | Unclassified | Unclassified | 207 | 2 |
| Cyanobacteria | Chroococcales | Unclassified | Unclassified | 217 | 1 |
| Alphaproteobacteria | Rhodospirillaceae | Unclassified | Unclassified | 221 | 1 |
| Deltaproteobacteria | Unclassified | Unclassified | Unclassified | 232 | 1 |
| Gammaproteobacteria | Oceanospirillales | Uncultured | Uncultured | 234 | 25 |
| Gammaproteobacteria | Oceanospirillales | Oleiphilaceae | Uncultured | 234 | 1 |
| Alphaproteobacteria | Rhodobacterales | Rhodobacteraceae | Thalassobacter | 248 | 56 |
| Alphaproteobacteria | Rhodobacterales | Rhodobacteraceae | Thalassobacter | 248 | 2 |
| Alphaproteobacteria | Rhodobacterales | Rhodobacteraceae | Thalassobacter | 248 | 2 |
| Alphaproteobacteria | Rhizobiales | Rhodobacteraceae | Thalassobacter | 248 | 1 |
| Gammaproteobacteria | Unclassified | Unclassified | Unclassified | 253 | 2 |
| Gammaproteobacteria | Alteromonadales | Endobugula | Uncultured | 273 | 1 |
| Alphaproteobacteria | Rhodobacterales | Rhodobacteraceae | Thalassobacter | 307 | 2 |
| Alphaproteobacteria | Rickettsiales | Uncultured | Unclassified | 352 | 1 |
| Alphaproteobacteria | Rhizobiales | Rhodobacteraceae | Thalassobacter | 391 | 1 |
| Class | Order | Family | Genus | Predicted AluI TRF | # of clones |
| Alphaproteobacteria | Unclassified | Unclassified | Unclassified | 66 | 2 |
| Alphaproteobacteria | Unclassified | Unclassified | Unclassified | 72 | 2 |
| Alphaproteobacteria | Rhizobiales | Unclassified | Unclassified | 72 | 1 |
| Alphaproteobacteria | Rhizobiales | Rhodobacteraceae | Thalassobacter | 73 | 1 |
| Bacteroidetes | Uncultured | Unclassified | Unclassified | 73 | 2 |
| Gammaproteobacteria | Legionellales | Coxiellaceae | Coxiella | 74 | 125 |
| Gammaproteobacteria | Unclassified | Unclassified | Unclassified | 74 | 16 |
| Gammaproteobacteria | Unclassified | Unclassified | Unclassified | 74 | 1 |
| Bacteroidetes | Unclassified | Unclassified | Unclassified | 74 | 1 |
| Gammaproteobacteria | Oceanospirillales | Oleiphilaceae | Uncultured | 74 | 1 |
| Gammaproteobacteria | Oceanospirillales | Oleiphilaceae | Uncultured | 82 | 2 |
| Gammaproteobacteria | Pseudomonadales | Moraxellaceae | Acinetobacter | 85 | 1 |
| Gammaproteobacteria | Unclassified | Unclassified | Unclassified | 127 | 1 |
| Alphaproteobacteria | Rhizobiales | Rhodobacteraceae | Roseovarius | 127 | 1 |
| Alphaproteobacteria | Unclassified | Unclassified | Unclassified | 128 | 2 |
| Gammaproteobacteria | Unclassified | Unclassified | Unclassified | 128 | 1 |
| Gammaproteobacteria | Oceanospirillales | Oleiphilaceae | Uncultured | 138 | 2 |
| Alphaproteobacteria | Rhodobacterales | Rhodobacteraceae | Thalassobacter | 139 | 2 |
| Betaproteobacteria | Burkholderiales | Unclassified | Unclassified | 139 | 1 |
| Gammaproteobacteria | Oceanospirillales | Oleiphilaceae | Unculutred | 147 | 1 |
| Gammaproteobacteria | Alteromonadales | Unclassified | Unclassified | 152 | 14 |
| Gammaproteobacteria | Alteromonadales | Unclassified | Unclassified | 152 | 3 |
| Gammaproteobacteria | Alteromonadales | Uncultured | Unclassified | 152 | 2 |
| Gammaproteobacteria | Unclassified | Unclassified | Unclassified | 152 | 1 |
| Gammaproteobacteria | Oceanospirillales | Oleiphilaceae | Uncultured | 152 | 1 |
| Gammaproteobacteria | Unclassified | Unclassified | Unclassified | 152 | 1 |
| Alphaproteobacteria | Rhodobacterales | Rhodobacteraceae | Thalassobacter | 201 | 3 |
| Alphaproteobacteria | Unclassified | Unclassified | Unclassified | 201 | 2 |
| Verrucomicrobia | Unclassified | Unclassified | Unclassified | 201 | 1 |
| Gammaproteobacteria | Oceanospirillales | Oleiphilaceae | Uncultured | 201 | 1 |
| Gammaproteobacteria | Unclassified | Unclassified | Unclassified | 204 | 2 |
| Bacteroidetes | Flavobacteriaceae | Unclassified | Unclassified | 206 | 1 |
| Bacteroidetes | Unclassified | Unclassified | Unclassified | 207 | 2 |
| Cyanobacteria | Chroococcales | Unclassified | Unclassified | 217 | 1 |
| Alphaproteobacteria | Rhodospirillaceae | Unclassified | Unclassified | 221 | 1 |
| Deltaproteobacteria | Unclassified | Unclassified | Unclassified | 232 | 1 |
| Gammaproteobacteria | Oceanospirillales | Uncultured | Uncultured | 234 | 25 |
| Gammaproteobacteria | Oceanospirillales | Oleiphilaceae | Uncultured | 234 | 1 |
| Alphaproteobacteria | Rhodobacterales | Rhodobacteraceae | Thalassobacter | 248 | 56 |
| Alphaproteobacteria | Rhodobacterales | Rhodobacteraceae | Thalassobacter | 248 | 2 |
| Alphaproteobacteria | Rhodobacterales | Rhodobacteraceae | Thalassobacter | 248 | 2 |
| Alphaproteobacteria | Rhizobiales | Rhodobacteraceae | Thalassobacter | 248 | 1 |
| Gammaproteobacteria | Unclassified | Unclassified | Unclassified | 253 | 2 |
| Gammaproteobacteria | Alteromonadales | Endobugula | Uncultured | 273 | 1 |
| Alphaproteobacteria | Rhodobacterales | Rhodobacteraceae | Thalassobacter | 307 | 2 |
| Alphaproteobacteria | Rickettsiales | Uncultured | Unclassified | 352 | 1 |
| Alphaproteobacteria | Rhizobiales | Rhodobacteraceae | Thalassobacter | 391 | 1 |
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