Possible binding sites to transcription factors of gene STE13ca from C. albicans
2000 pb upstream of the starting codon (ATG) were analyzed.
S: Positive/negative strand.
Basepairs marked in bold show high information content, i.e., the matrix exhibits a high conservation at this position.
The “core sequence” of a matrix is defined as the (usually 4) consecutive highest conserved positions of the matrix.
The analysis was performed with a “core similarity” of 0.9. The maximum core similarity of 1.0 is only reached when the highest conserved bases of a matrix match exactly in the sequence. More important than the core similarity is the matrix similarity, which takes into account all bases over the whole matrix length. A perfect match to the matrix gets a score of 1.00 (each sequence position corresponds to the highest conserved nucleotide at that position in the matriz), a good match to the matriz usually has a similarity of >0.80.
Basepairs in capital letters denote the core sequence used by MatInspector.
Possible binding sites to transcription factors of gene STE13ca from C. albicans
2000 pb upstream of the starting codon (ATG) were analyzed.
S: Positive/negative strand.
Basepairs marked in bold show high information content, i.e., the matrix exhibits a high conservation at this position.
The “core sequence” of a matrix is defined as the (usually 4) consecutive highest conserved positions of the matrix.
The analysis was performed with a “core similarity” of 0.9. The maximum core similarity of 1.0 is only reached when the highest conserved bases of a matrix match exactly in the sequence. More important than the core similarity is the matrix similarity, which takes into account all bases over the whole matrix length. A perfect match to the matrix gets a score of 1.00 (each sequence position corresponds to the highest conserved nucleotide at that position in the matriz), a good match to the matriz usually has a similarity of >0.80.
Basepairs in capital letters denote the core sequence used by MatInspector.
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