List of polyhydroxyalkanoate-producing (positive in PCR and microscopy) bacteria isolated from sugar beet, oilseed rape and wheat
BOX group | Isolate no. | Microenvironment | Closest database match (EMBL no.) | % Homology |
C | R1-4 | Rhizosphere oilseed rape | Pseudomonas brassicacearum (FN313510) | 99 |
I | R1-8 | Rhizosphere oilseed rape | Pseudomonas extremaustralis (FN313511) | 99 |
K | W3-4 | Rhizosphere wheat | Pseudomonas sp. (FN313512) | 100 |
F | W4-3 | Rhizosphere wheat | Pseudomonas orientalis (FN313513) | 99 |
C | W4-5 | Rhizosphere wheat | Pseudomonas sp. (FN313514) | 100 |
J | W4-7 | Rhizosphere wheat | Sinorhizobium sp. (FN313515) | 100 |
E | ZR1-4 | Rhizosphere sugar beet | Pseudomonas sp. (FN313516) | 99 |
C | ZR1-5 | Rhizosphere sugar beet | Variovorax sp. (FN313517) | 100 |
F | ZR 1-10 | Rhizosphere sugar beet | Pseudomonas sp. (FN313518) | 100 |
L | ZR 1-17 | Rhizosphere sugar beet | Lysobacter gummosus (FN313519) | 99 |
D | ZR2-4 | Rhizosphere sugar beet | Ensifer sp. (FN313520) | 100 |
B | ZR2-12 | Rhizosphere sugar beet | Burkholderia terricola (FN313521) | 100 |
G | ZR2-15 | Rhizosphere sugar beet | Pseudomonas putida (FN313522) | 100 |
D | ZR2-16 | Rhizosphere sugar beet | Pseudomonas sp. (FN313523) | 98 |
D | ZR3-7 | Rhizosphere sugar beet | Pseudomonas sp. (FN313524) | 98 |
H | ZR3-10 | Rhizosphere sugar beet | Pseudomonas sp. (FN313525) | 99 |
A | ZR3-12 | Rhizosphere sugar beet | Pseudomonas sp. (FN313526) | 100 |
C | ZR4-11 | Rhizosphere sugar beet | Pseudomonas sp. (FN313527) | 98 |
M | LV2-2-10 | Rhizosphere sugar beet | Pseudomonas fluorescens (AJ969079) | 87 |
N | R1-2-4 | Rhizosphere sugar beet | Pseudomonas sp. (FN313528) | 100 |
O | Sel1-2-6 | Rhizosphere sugar beet | Pseudomonas sp. (FN313529) | 99 |
P | At1-1-2 | Rhizosphere sugar beet | Pseudomonas sp. (FN313530) | 100 |
Q | Phst2-1-6 | Rhizosphere sugar beet | Pseudomonas sp. (FN313531) | 99 |
R | At2-2-11 | Rhizosphere sugar beet | Pseudomonas sp. (FN313532) | 99 |
S | SDK1-2-10 | Rhizosphere sugar beet | Pseudomonas sp. (FN313533) | 99 |
S | SDK1-2-16 | Rhizosphere sugar beet | Pseudomonas sp. (FN313534) | 100 |
T | SDK1-2-18 | Rhizosphere sugar beet | Pantoea sp. (FN313535) | 99 |
U | SDK2-2-6 | Rhizosphere sugar beet | Pseudomonas sp. (AJ969083) | 100 |
V | SDK2-2-8 | Rhizosphere sugar beet | Pseudomonas sp. (FN313536) | 100 |
X | RE 1-3-41 | Rhizosphere sugar beet | Erwinia rhapontici (FN313537) | 99 |
BOX group | Isolate no. | Microenvironment | Closest database match (EMBL no.) | % Homology |
C | R1-4 | Rhizosphere oilseed rape | Pseudomonas brassicacearum (FN313510) | 99 |
I | R1-8 | Rhizosphere oilseed rape | Pseudomonas extremaustralis (FN313511) | 99 |
K | W3-4 | Rhizosphere wheat | Pseudomonas sp. (FN313512) | 100 |
F | W4-3 | Rhizosphere wheat | Pseudomonas orientalis (FN313513) | 99 |
C | W4-5 | Rhizosphere wheat | Pseudomonas sp. (FN313514) | 100 |
J | W4-7 | Rhizosphere wheat | Sinorhizobium sp. (FN313515) | 100 |
E | ZR1-4 | Rhizosphere sugar beet | Pseudomonas sp. (FN313516) | 99 |
C | ZR1-5 | Rhizosphere sugar beet | Variovorax sp. (FN313517) | 100 |
F | ZR 1-10 | Rhizosphere sugar beet | Pseudomonas sp. (FN313518) | 100 |
L | ZR 1-17 | Rhizosphere sugar beet | Lysobacter gummosus (FN313519) | 99 |
D | ZR2-4 | Rhizosphere sugar beet | Ensifer sp. (FN313520) | 100 |
B | ZR2-12 | Rhizosphere sugar beet | Burkholderia terricola (FN313521) | 100 |
G | ZR2-15 | Rhizosphere sugar beet | Pseudomonas putida (FN313522) | 100 |
D | ZR2-16 | Rhizosphere sugar beet | Pseudomonas sp. (FN313523) | 98 |
D | ZR3-7 | Rhizosphere sugar beet | Pseudomonas sp. (FN313524) | 98 |
H | ZR3-10 | Rhizosphere sugar beet | Pseudomonas sp. (FN313525) | 99 |
A | ZR3-12 | Rhizosphere sugar beet | Pseudomonas sp. (FN313526) | 100 |
C | ZR4-11 | Rhizosphere sugar beet | Pseudomonas sp. (FN313527) | 98 |
M | LV2-2-10 | Rhizosphere sugar beet | Pseudomonas fluorescens (AJ969079) | 87 |
N | R1-2-4 | Rhizosphere sugar beet | Pseudomonas sp. (FN313528) | 100 |
O | Sel1-2-6 | Rhizosphere sugar beet | Pseudomonas sp. (FN313529) | 99 |
P | At1-1-2 | Rhizosphere sugar beet | Pseudomonas sp. (FN313530) | 100 |
Q | Phst2-1-6 | Rhizosphere sugar beet | Pseudomonas sp. (FN313531) | 99 |
R | At2-2-11 | Rhizosphere sugar beet | Pseudomonas sp. (FN313532) | 99 |
S | SDK1-2-10 | Rhizosphere sugar beet | Pseudomonas sp. (FN313533) | 99 |
S | SDK1-2-16 | Rhizosphere sugar beet | Pseudomonas sp. (FN313534) | 100 |
T | SDK1-2-18 | Rhizosphere sugar beet | Pantoea sp. (FN313535) | 99 |
U | SDK2-2-6 | Rhizosphere sugar beet | Pseudomonas sp. (AJ969083) | 100 |
V | SDK2-2-8 | Rhizosphere sugar beet | Pseudomonas sp. (FN313536) | 100 |
X | RE 1-3-41 | Rhizosphere sugar beet | Erwinia rhapontici (FN313537) | 99 |
Arabic numerals represent the plots (1–4) and the strain number (1–16).
Letters represent the location or microhabitat: R, oilseed rape (Deggendorf, Germany); W, wheat (Deggendorf, Germany); ZR, sugar beet (Deggendorf, Germany); Sel, Seligenstadt, Germany (ZR); At, Attily, France (ZR); Phst, Hilprechtshausen, Germany (ZR); SDK Schoondijke, the Netherlands (ZR); LV, LaVeuve, France (ZR).
List of polyhydroxyalkanoate-producing (positive in PCR and microscopy) bacteria isolated from sugar beet, oilseed rape and wheat
BOX group | Isolate no. | Microenvironment | Closest database match (EMBL no.) | % Homology |
C | R1-4 | Rhizosphere oilseed rape | Pseudomonas brassicacearum (FN313510) | 99 |
I | R1-8 | Rhizosphere oilseed rape | Pseudomonas extremaustralis (FN313511) | 99 |
K | W3-4 | Rhizosphere wheat | Pseudomonas sp. (FN313512) | 100 |
F | W4-3 | Rhizosphere wheat | Pseudomonas orientalis (FN313513) | 99 |
C | W4-5 | Rhizosphere wheat | Pseudomonas sp. (FN313514) | 100 |
J | W4-7 | Rhizosphere wheat | Sinorhizobium sp. (FN313515) | 100 |
E | ZR1-4 | Rhizosphere sugar beet | Pseudomonas sp. (FN313516) | 99 |
C | ZR1-5 | Rhizosphere sugar beet | Variovorax sp. (FN313517) | 100 |
F | ZR 1-10 | Rhizosphere sugar beet | Pseudomonas sp. (FN313518) | 100 |
L | ZR 1-17 | Rhizosphere sugar beet | Lysobacter gummosus (FN313519) | 99 |
D | ZR2-4 | Rhizosphere sugar beet | Ensifer sp. (FN313520) | 100 |
B | ZR2-12 | Rhizosphere sugar beet | Burkholderia terricola (FN313521) | 100 |
G | ZR2-15 | Rhizosphere sugar beet | Pseudomonas putida (FN313522) | 100 |
D | ZR2-16 | Rhizosphere sugar beet | Pseudomonas sp. (FN313523) | 98 |
D | ZR3-7 | Rhizosphere sugar beet | Pseudomonas sp. (FN313524) | 98 |
H | ZR3-10 | Rhizosphere sugar beet | Pseudomonas sp. (FN313525) | 99 |
A | ZR3-12 | Rhizosphere sugar beet | Pseudomonas sp. (FN313526) | 100 |
C | ZR4-11 | Rhizosphere sugar beet | Pseudomonas sp. (FN313527) | 98 |
M | LV2-2-10 | Rhizosphere sugar beet | Pseudomonas fluorescens (AJ969079) | 87 |
N | R1-2-4 | Rhizosphere sugar beet | Pseudomonas sp. (FN313528) | 100 |
O | Sel1-2-6 | Rhizosphere sugar beet | Pseudomonas sp. (FN313529) | 99 |
P | At1-1-2 | Rhizosphere sugar beet | Pseudomonas sp. (FN313530) | 100 |
Q | Phst2-1-6 | Rhizosphere sugar beet | Pseudomonas sp. (FN313531) | 99 |
R | At2-2-11 | Rhizosphere sugar beet | Pseudomonas sp. (FN313532) | 99 |
S | SDK1-2-10 | Rhizosphere sugar beet | Pseudomonas sp. (FN313533) | 99 |
S | SDK1-2-16 | Rhizosphere sugar beet | Pseudomonas sp. (FN313534) | 100 |
T | SDK1-2-18 | Rhizosphere sugar beet | Pantoea sp. (FN313535) | 99 |
U | SDK2-2-6 | Rhizosphere sugar beet | Pseudomonas sp. (AJ969083) | 100 |
V | SDK2-2-8 | Rhizosphere sugar beet | Pseudomonas sp. (FN313536) | 100 |
X | RE 1-3-41 | Rhizosphere sugar beet | Erwinia rhapontici (FN313537) | 99 |
BOX group | Isolate no. | Microenvironment | Closest database match (EMBL no.) | % Homology |
C | R1-4 | Rhizosphere oilseed rape | Pseudomonas brassicacearum (FN313510) | 99 |
I | R1-8 | Rhizosphere oilseed rape | Pseudomonas extremaustralis (FN313511) | 99 |
K | W3-4 | Rhizosphere wheat | Pseudomonas sp. (FN313512) | 100 |
F | W4-3 | Rhizosphere wheat | Pseudomonas orientalis (FN313513) | 99 |
C | W4-5 | Rhizosphere wheat | Pseudomonas sp. (FN313514) | 100 |
J | W4-7 | Rhizosphere wheat | Sinorhizobium sp. (FN313515) | 100 |
E | ZR1-4 | Rhizosphere sugar beet | Pseudomonas sp. (FN313516) | 99 |
C | ZR1-5 | Rhizosphere sugar beet | Variovorax sp. (FN313517) | 100 |
F | ZR 1-10 | Rhizosphere sugar beet | Pseudomonas sp. (FN313518) | 100 |
L | ZR 1-17 | Rhizosphere sugar beet | Lysobacter gummosus (FN313519) | 99 |
D | ZR2-4 | Rhizosphere sugar beet | Ensifer sp. (FN313520) | 100 |
B | ZR2-12 | Rhizosphere sugar beet | Burkholderia terricola (FN313521) | 100 |
G | ZR2-15 | Rhizosphere sugar beet | Pseudomonas putida (FN313522) | 100 |
D | ZR2-16 | Rhizosphere sugar beet | Pseudomonas sp. (FN313523) | 98 |
D | ZR3-7 | Rhizosphere sugar beet | Pseudomonas sp. (FN313524) | 98 |
H | ZR3-10 | Rhizosphere sugar beet | Pseudomonas sp. (FN313525) | 99 |
A | ZR3-12 | Rhizosphere sugar beet | Pseudomonas sp. (FN313526) | 100 |
C | ZR4-11 | Rhizosphere sugar beet | Pseudomonas sp. (FN313527) | 98 |
M | LV2-2-10 | Rhizosphere sugar beet | Pseudomonas fluorescens (AJ969079) | 87 |
N | R1-2-4 | Rhizosphere sugar beet | Pseudomonas sp. (FN313528) | 100 |
O | Sel1-2-6 | Rhizosphere sugar beet | Pseudomonas sp. (FN313529) | 99 |
P | At1-1-2 | Rhizosphere sugar beet | Pseudomonas sp. (FN313530) | 100 |
Q | Phst2-1-6 | Rhizosphere sugar beet | Pseudomonas sp. (FN313531) | 99 |
R | At2-2-11 | Rhizosphere sugar beet | Pseudomonas sp. (FN313532) | 99 |
S | SDK1-2-10 | Rhizosphere sugar beet | Pseudomonas sp. (FN313533) | 99 |
S | SDK1-2-16 | Rhizosphere sugar beet | Pseudomonas sp. (FN313534) | 100 |
T | SDK1-2-18 | Rhizosphere sugar beet | Pantoea sp. (FN313535) | 99 |
U | SDK2-2-6 | Rhizosphere sugar beet | Pseudomonas sp. (AJ969083) | 100 |
V | SDK2-2-8 | Rhizosphere sugar beet | Pseudomonas sp. (FN313536) | 100 |
X | RE 1-3-41 | Rhizosphere sugar beet | Erwinia rhapontici (FN313537) | 99 |
Arabic numerals represent the plots (1–4) and the strain number (1–16).
Letters represent the location or microhabitat: R, oilseed rape (Deggendorf, Germany); W, wheat (Deggendorf, Germany); ZR, sugar beet (Deggendorf, Germany); Sel, Seligenstadt, Germany (ZR); At, Attily, France (ZR); Phst, Hilprechtshausen, Germany (ZR); SDK Schoondijke, the Netherlands (ZR); LV, LaVeuve, France (ZR).
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