| RNA classes* . | 8013 . | MC58 . | WUE2594 . | Z2491 . |
|---|---|---|---|---|
| Structural RNAs | 6S RNA | 6S RNA | 6S RNA | 6S RNA |
| RNaseP | RNaseP | RNaseP | RNaseP | |
| tmRNA | tmRNA | tmRNA | tmRNA | |
| SRP | SRP | SRP | SRP | |
| Riboswitches | preQ riboswitch | preQ riboswitch | preQ riboswitch | preQ riboswitch |
| Tpp riboswitch | Tpp riboswitch | Tpp riboswitch | Tpp riboswitch | |
| sRNAs known (n°10) | AniSb | AniSb | AniSb | AniSb |
| NrrFc | NrrFc | NrrFc | NrrFc | |
| Bns1d | Bns1d | Bns1d | Bns1d | |
| Bns2d | Bns2d | Bns2d | Bns2d | |
| σEsRNAe | σEsRNAe | σEsRNAe | σEsRNAe | |
| G4-assoc. sRNAf | G4-assoc. sRNAf | - | - | |
| 0863-0864_Fg | 0863-0864_Fg | 0863-0864_Fg | 0863-0864_Fg | |
| 1400-1401_Fg | 1400-1401_Fg | 1400-1401_Fg | 1400-1401_Fg | |
| tracrRNAh | - | tracrRNAh – | tracrRNAh | |
| crRNAs (n°25) | - | crRNAs (n°22) | crRNAs (n°16) | |
| sRNAs this study (n°45) | NMnc0001 | NMnc0001 | NMnc0001 | NMnc0001 |
| NMnc0002 | NMnc0002 | NMnc0002 | NMnc0002 | |
| NMnc0003 | NMnc0003 | NMnc0003 | NMnc0003 | |
| NMnc0004 | - | - | - | |
| NMnc0005 | - | - | - | |
| NMnc0006 | - | - | - | |
| NMnc0007 | NMnc0007 | NMnc0007 | NMnc0007 | |
| NMnc0008 | NMnc0008 | NMnc0008 | NMnc0008 | |
| NMnc0009 | NMnc0009 | NMnc0009 | NMnc0009 | |
| NMnc0010 | NMnc0010 | NMnc0010 | NMnc0010 | |
| NMnc0011 | NMnc0011 | NMnc0011 | NMnc0011 | |
| NMnc0012 | NMnc0012 | NMnc0012 | NMnc0012 | |
| NMnc0013 | NMnc0013 | NMnc0013 | NMnc0013 | |
| NMnc0014 | - | - | - | |
| NMnc0015 | NMnc0015 | NMnc0015 | NMnc015 | |
| NMnc0016 | NMnc0016 | NMnc0016 | NMnc016 | |
| RcoF1 | RcoF1 | RcoF1 | RcoF1 | |
| RcoF2 | RcoF2 | RcoF2 | RcoF2 | |
| NMnc0019 | NMnc0019 | NMnc0019 | NMnc0019 | |
| NMnc0020 | NMnc0020 | NMnc0020 | NMnc0020 | |
| NMnc0021 | NMnc0021 | NMnc0021 | NMnc0021 | |
| NMnc0022 | NMnc0022 | NMnc0022 | NMnc0022 | |
| NMnc0023 | NMnc0023 | NMnc0023 | NMnc0023 | |
| NMnc0024 | - | - | - | |
| NMnc0025 | NMnc0025 | NMnc0025 | NMnc0025 | |
| NMnc0026 | NMnc0026 | NMnc0026 | NMnc0026 | |
| NMnc0027 | NMnc0027 | NMnc0027 | NMnc0027 | |
| NMnc0028 | NMnc0028 | NMnc0028 | NMnc0028 | |
| NMnc0029 | NMnc0029 | NMnc0029 | NMnc0029 | |
| NMnc0030 | - | - | - | |
| NMnc0031 | NMnc0031 | - | - | |
| NMnc0032 | NMnc0032 | NMnc0032 | NMnc0032 | |
| NMnc0033 | NMnc0033 | NMnc0033 | NMnc0033 | |
| NMnc0034 | NMnc0034 | NMnc0034 | - | |
| NMnc0035 | NMnc0035 | NMnc0035 | NMnc0035 | |
| NMnc0036 | NMnc0036 | NMnc0036 | NMnc0036 | |
| NMnc0037 | NMnc0037 | NMnc0037 | NMnc0037 | |
| NMnc0038 | NMnc0038 | NMnc0038 | NMnc0038 | |
| NMnc0039 | NMnc0039 | NMnc0039 | NMnc0039 | |
| NMnc0040 | - | NMnc0040 | NMnc0040 | |
| NMnc0041 | NMnc0041 | NMnc0041 | NMnc0041 | |
| NMnc0042 | NMnc0042 | - | - | |
| NMnc0043 | NMnc0043 | NMnc0043 | NMnc0043 | |
| NMnc0044 | NMnc0044 | NMnc0044 | NMnc0044 | |
| NMnc0045 | NMnc0045 | NMnc0045 | NMnc0045 | |
| Genome Reference | (41) | (123) | (124) | (125) |
| RNA classes* . | 8013 . | MC58 . | WUE2594 . | Z2491 . |
|---|---|---|---|---|
| Structural RNAs | 6S RNA | 6S RNA | 6S RNA | 6S RNA |
| RNaseP | RNaseP | RNaseP | RNaseP | |
| tmRNA | tmRNA | tmRNA | tmRNA | |
| SRP | SRP | SRP | SRP | |
| Riboswitches | preQ riboswitch | preQ riboswitch | preQ riboswitch | preQ riboswitch |
| Tpp riboswitch | Tpp riboswitch | Tpp riboswitch | Tpp riboswitch | |
| sRNAs known (n°10) | AniSb | AniSb | AniSb | AniSb |
| NrrFc | NrrFc | NrrFc | NrrFc | |
| Bns1d | Bns1d | Bns1d | Bns1d | |
| Bns2d | Bns2d | Bns2d | Bns2d | |
| σEsRNAe | σEsRNAe | σEsRNAe | σEsRNAe | |
| G4-assoc. sRNAf | G4-assoc. sRNAf | - | - | |
| 0863-0864_Fg | 0863-0864_Fg | 0863-0864_Fg | 0863-0864_Fg | |
| 1400-1401_Fg | 1400-1401_Fg | 1400-1401_Fg | 1400-1401_Fg | |
| tracrRNAh | - | tracrRNAh – | tracrRNAh | |
| crRNAs (n°25) | - | crRNAs (n°22) | crRNAs (n°16) | |
| sRNAs this study (n°45) | NMnc0001 | NMnc0001 | NMnc0001 | NMnc0001 |
| NMnc0002 | NMnc0002 | NMnc0002 | NMnc0002 | |
| NMnc0003 | NMnc0003 | NMnc0003 | NMnc0003 | |
| NMnc0004 | - | - | - | |
| NMnc0005 | - | - | - | |
| NMnc0006 | - | - | - | |
| NMnc0007 | NMnc0007 | NMnc0007 | NMnc0007 | |
| NMnc0008 | NMnc0008 | NMnc0008 | NMnc0008 | |
| NMnc0009 | NMnc0009 | NMnc0009 | NMnc0009 | |
| NMnc0010 | NMnc0010 | NMnc0010 | NMnc0010 | |
| NMnc0011 | NMnc0011 | NMnc0011 | NMnc0011 | |
| NMnc0012 | NMnc0012 | NMnc0012 | NMnc0012 | |
| NMnc0013 | NMnc0013 | NMnc0013 | NMnc0013 | |
| NMnc0014 | - | - | - | |
| NMnc0015 | NMnc0015 | NMnc0015 | NMnc015 | |
| NMnc0016 | NMnc0016 | NMnc0016 | NMnc016 | |
| RcoF1 | RcoF1 | RcoF1 | RcoF1 | |
| RcoF2 | RcoF2 | RcoF2 | RcoF2 | |
| NMnc0019 | NMnc0019 | NMnc0019 | NMnc0019 | |
| NMnc0020 | NMnc0020 | NMnc0020 | NMnc0020 | |
| NMnc0021 | NMnc0021 | NMnc0021 | NMnc0021 | |
| NMnc0022 | NMnc0022 | NMnc0022 | NMnc0022 | |
| NMnc0023 | NMnc0023 | NMnc0023 | NMnc0023 | |
| NMnc0024 | - | - | - | |
| NMnc0025 | NMnc0025 | NMnc0025 | NMnc0025 | |
| NMnc0026 | NMnc0026 | NMnc0026 | NMnc0026 | |
| NMnc0027 | NMnc0027 | NMnc0027 | NMnc0027 | |
| NMnc0028 | NMnc0028 | NMnc0028 | NMnc0028 | |
| NMnc0029 | NMnc0029 | NMnc0029 | NMnc0029 | |
| NMnc0030 | - | - | - | |
| NMnc0031 | NMnc0031 | - | - | |
| NMnc0032 | NMnc0032 | NMnc0032 | NMnc0032 | |
| NMnc0033 | NMnc0033 | NMnc0033 | NMnc0033 | |
| NMnc0034 | NMnc0034 | NMnc0034 | - | |
| NMnc0035 | NMnc0035 | NMnc0035 | NMnc0035 | |
| NMnc0036 | NMnc0036 | NMnc0036 | NMnc0036 | |
| NMnc0037 | NMnc0037 | NMnc0037 | NMnc0037 | |
| NMnc0038 | NMnc0038 | NMnc0038 | NMnc0038 | |
| NMnc0039 | NMnc0039 | NMnc0039 | NMnc0039 | |
| NMnc0040 | - | NMnc0040 | NMnc0040 | |
| NMnc0041 | NMnc0041 | NMnc0041 | NMnc0041 | |
| NMnc0042 | NMnc0042 | - | - | |
| NMnc0043 | NMnc0043 | NMnc0043 | NMnc0043 | |
| NMnc0044 | NMnc0044 | NMnc0044 | NMnc0044 | |
| NMnc0045 | NMnc0045 | NMnc0045 | NMnc0045 | |
| Genome Reference | (41) | (123) | (124) | (125) |
*Detailed information concerning annotations of RNA classes is listed in Dataset S5.
aNumber of ORFs according to NCBI annotations (November 2016).
b(20)
c(22)
d(19)
e(24)
f(126)
g(18)
h(7)
n°-number, - sRNAs absent in N. meningitidis strains WUE2594, MC58, Z2491 based on conservation analyzes by basic local alignmentsearch tool (BLAST) searches regarding identity values below 40%.
| RNA classes* . | 8013 . | MC58 . | WUE2594 . | Z2491 . |
|---|---|---|---|---|
| Structural RNAs | 6S RNA | 6S RNA | 6S RNA | 6S RNA |
| RNaseP | RNaseP | RNaseP | RNaseP | |
| tmRNA | tmRNA | tmRNA | tmRNA | |
| SRP | SRP | SRP | SRP | |
| Riboswitches | preQ riboswitch | preQ riboswitch | preQ riboswitch | preQ riboswitch |
| Tpp riboswitch | Tpp riboswitch | Tpp riboswitch | Tpp riboswitch | |
| sRNAs known (n°10) | AniSb | AniSb | AniSb | AniSb |
| NrrFc | NrrFc | NrrFc | NrrFc | |
| Bns1d | Bns1d | Bns1d | Bns1d | |
| Bns2d | Bns2d | Bns2d | Bns2d | |
| σEsRNAe | σEsRNAe | σEsRNAe | σEsRNAe | |
| G4-assoc. sRNAf | G4-assoc. sRNAf | - | - | |
| 0863-0864_Fg | 0863-0864_Fg | 0863-0864_Fg | 0863-0864_Fg | |
| 1400-1401_Fg | 1400-1401_Fg | 1400-1401_Fg | 1400-1401_Fg | |
| tracrRNAh | - | tracrRNAh – | tracrRNAh | |
| crRNAs (n°25) | - | crRNAs (n°22) | crRNAs (n°16) | |
| sRNAs this study (n°45) | NMnc0001 | NMnc0001 | NMnc0001 | NMnc0001 |
| NMnc0002 | NMnc0002 | NMnc0002 | NMnc0002 | |
| NMnc0003 | NMnc0003 | NMnc0003 | NMnc0003 | |
| NMnc0004 | - | - | - | |
| NMnc0005 | - | - | - | |
| NMnc0006 | - | - | - | |
| NMnc0007 | NMnc0007 | NMnc0007 | NMnc0007 | |
| NMnc0008 | NMnc0008 | NMnc0008 | NMnc0008 | |
| NMnc0009 | NMnc0009 | NMnc0009 | NMnc0009 | |
| NMnc0010 | NMnc0010 | NMnc0010 | NMnc0010 | |
| NMnc0011 | NMnc0011 | NMnc0011 | NMnc0011 | |
| NMnc0012 | NMnc0012 | NMnc0012 | NMnc0012 | |
| NMnc0013 | NMnc0013 | NMnc0013 | NMnc0013 | |
| NMnc0014 | - | - | - | |
| NMnc0015 | NMnc0015 | NMnc0015 | NMnc015 | |
| NMnc0016 | NMnc0016 | NMnc0016 | NMnc016 | |
| RcoF1 | RcoF1 | RcoF1 | RcoF1 | |
| RcoF2 | RcoF2 | RcoF2 | RcoF2 | |
| NMnc0019 | NMnc0019 | NMnc0019 | NMnc0019 | |
| NMnc0020 | NMnc0020 | NMnc0020 | NMnc0020 | |
| NMnc0021 | NMnc0021 | NMnc0021 | NMnc0021 | |
| NMnc0022 | NMnc0022 | NMnc0022 | NMnc0022 | |
| NMnc0023 | NMnc0023 | NMnc0023 | NMnc0023 | |
| NMnc0024 | - | - | - | |
| NMnc0025 | NMnc0025 | NMnc0025 | NMnc0025 | |
| NMnc0026 | NMnc0026 | NMnc0026 | NMnc0026 | |
| NMnc0027 | NMnc0027 | NMnc0027 | NMnc0027 | |
| NMnc0028 | NMnc0028 | NMnc0028 | NMnc0028 | |
| NMnc0029 | NMnc0029 | NMnc0029 | NMnc0029 | |
| NMnc0030 | - | - | - | |
| NMnc0031 | NMnc0031 | - | - | |
| NMnc0032 | NMnc0032 | NMnc0032 | NMnc0032 | |
| NMnc0033 | NMnc0033 | NMnc0033 | NMnc0033 | |
| NMnc0034 | NMnc0034 | NMnc0034 | - | |
| NMnc0035 | NMnc0035 | NMnc0035 | NMnc0035 | |
| NMnc0036 | NMnc0036 | NMnc0036 | NMnc0036 | |
| NMnc0037 | NMnc0037 | NMnc0037 | NMnc0037 | |
| NMnc0038 | NMnc0038 | NMnc0038 | NMnc0038 | |
| NMnc0039 | NMnc0039 | NMnc0039 | NMnc0039 | |
| NMnc0040 | - | NMnc0040 | NMnc0040 | |
| NMnc0041 | NMnc0041 | NMnc0041 | NMnc0041 | |
| NMnc0042 | NMnc0042 | - | - | |
| NMnc0043 | NMnc0043 | NMnc0043 | NMnc0043 | |
| NMnc0044 | NMnc0044 | NMnc0044 | NMnc0044 | |
| NMnc0045 | NMnc0045 | NMnc0045 | NMnc0045 | |
| Genome Reference | (41) | (123) | (124) | (125) |
| RNA classes* . | 8013 . | MC58 . | WUE2594 . | Z2491 . |
|---|---|---|---|---|
| Structural RNAs | 6S RNA | 6S RNA | 6S RNA | 6S RNA |
| RNaseP | RNaseP | RNaseP | RNaseP | |
| tmRNA | tmRNA | tmRNA | tmRNA | |
| SRP | SRP | SRP | SRP | |
| Riboswitches | preQ riboswitch | preQ riboswitch | preQ riboswitch | preQ riboswitch |
| Tpp riboswitch | Tpp riboswitch | Tpp riboswitch | Tpp riboswitch | |
| sRNAs known (n°10) | AniSb | AniSb | AniSb | AniSb |
| NrrFc | NrrFc | NrrFc | NrrFc | |
| Bns1d | Bns1d | Bns1d | Bns1d | |
| Bns2d | Bns2d | Bns2d | Bns2d | |
| σEsRNAe | σEsRNAe | σEsRNAe | σEsRNAe | |
| G4-assoc. sRNAf | G4-assoc. sRNAf | - | - | |
| 0863-0864_Fg | 0863-0864_Fg | 0863-0864_Fg | 0863-0864_Fg | |
| 1400-1401_Fg | 1400-1401_Fg | 1400-1401_Fg | 1400-1401_Fg | |
| tracrRNAh | - | tracrRNAh – | tracrRNAh | |
| crRNAs (n°25) | - | crRNAs (n°22) | crRNAs (n°16) | |
| sRNAs this study (n°45) | NMnc0001 | NMnc0001 | NMnc0001 | NMnc0001 |
| NMnc0002 | NMnc0002 | NMnc0002 | NMnc0002 | |
| NMnc0003 | NMnc0003 | NMnc0003 | NMnc0003 | |
| NMnc0004 | - | - | - | |
| NMnc0005 | - | - | - | |
| NMnc0006 | - | - | - | |
| NMnc0007 | NMnc0007 | NMnc0007 | NMnc0007 | |
| NMnc0008 | NMnc0008 | NMnc0008 | NMnc0008 | |
| NMnc0009 | NMnc0009 | NMnc0009 | NMnc0009 | |
| NMnc0010 | NMnc0010 | NMnc0010 | NMnc0010 | |
| NMnc0011 | NMnc0011 | NMnc0011 | NMnc0011 | |
| NMnc0012 | NMnc0012 | NMnc0012 | NMnc0012 | |
| NMnc0013 | NMnc0013 | NMnc0013 | NMnc0013 | |
| NMnc0014 | - | - | - | |
| NMnc0015 | NMnc0015 | NMnc0015 | NMnc015 | |
| NMnc0016 | NMnc0016 | NMnc0016 | NMnc016 | |
| RcoF1 | RcoF1 | RcoF1 | RcoF1 | |
| RcoF2 | RcoF2 | RcoF2 | RcoF2 | |
| NMnc0019 | NMnc0019 | NMnc0019 | NMnc0019 | |
| NMnc0020 | NMnc0020 | NMnc0020 | NMnc0020 | |
| NMnc0021 | NMnc0021 | NMnc0021 | NMnc0021 | |
| NMnc0022 | NMnc0022 | NMnc0022 | NMnc0022 | |
| NMnc0023 | NMnc0023 | NMnc0023 | NMnc0023 | |
| NMnc0024 | - | - | - | |
| NMnc0025 | NMnc0025 | NMnc0025 | NMnc0025 | |
| NMnc0026 | NMnc0026 | NMnc0026 | NMnc0026 | |
| NMnc0027 | NMnc0027 | NMnc0027 | NMnc0027 | |
| NMnc0028 | NMnc0028 | NMnc0028 | NMnc0028 | |
| NMnc0029 | NMnc0029 | NMnc0029 | NMnc0029 | |
| NMnc0030 | - | - | - | |
| NMnc0031 | NMnc0031 | - | - | |
| NMnc0032 | NMnc0032 | NMnc0032 | NMnc0032 | |
| NMnc0033 | NMnc0033 | NMnc0033 | NMnc0033 | |
| NMnc0034 | NMnc0034 | NMnc0034 | - | |
| NMnc0035 | NMnc0035 | NMnc0035 | NMnc0035 | |
| NMnc0036 | NMnc0036 | NMnc0036 | NMnc0036 | |
| NMnc0037 | NMnc0037 | NMnc0037 | NMnc0037 | |
| NMnc0038 | NMnc0038 | NMnc0038 | NMnc0038 | |
| NMnc0039 | NMnc0039 | NMnc0039 | NMnc0039 | |
| NMnc0040 | - | NMnc0040 | NMnc0040 | |
| NMnc0041 | NMnc0041 | NMnc0041 | NMnc0041 | |
| NMnc0042 | NMnc0042 | - | - | |
| NMnc0043 | NMnc0043 | NMnc0043 | NMnc0043 | |
| NMnc0044 | NMnc0044 | NMnc0044 | NMnc0044 | |
| NMnc0045 | NMnc0045 | NMnc0045 | NMnc0045 | |
| Genome Reference | (41) | (123) | (124) | (125) |
*Detailed information concerning annotations of RNA classes is listed in Dataset S5.
aNumber of ORFs according to NCBI annotations (November 2016).
b(20)
c(22)
d(19)
e(24)
f(126)
g(18)
h(7)
n°-number, - sRNAs absent in N. meningitidis strains WUE2594, MC58, Z2491 based on conservation analyzes by basic local alignmentsearch tool (BLAST) searches regarding identity values below 40%.
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