Result sumary of the canSNP typing, erythromycin susceptibility analysis and SNPs identified in the genes rrl, rplD and rplV for 314 F. tularensis strains
| CanSNP group . | Country of origin (n) . | Terminal canSNP . | Erythromycin susceptibility . | Biovar . | rrl (23S rRNA) SNPa . | rplD (L4) SNP . | rplV (L22) SNP . |
|---|---|---|---|---|---|---|---|
| B.4 | Sweden (7) Norway (1) USA (1) | S | I | C591 T, C1405 T, C1531 T, G2458A, C2533 T, T2687C | ancestral | ancestral | |
| B.6 | Sweden (78) Norway (10) | B.7 | S | I | C591 T, C1405 T, C1531 T, G2458A, C2533 T, T2687C | ancestral | ancestral |
| USA (1) | B.8 | S | I | C591 T, C1405 T, C1531 T, G2458A, C2533 T, T2687C | ancestral | ancestral | |
| Sweden (3) | B.10 | S | I | C591 T, C1405 T, C1531 T, G2458A, C2533 T, T2687C | ancestral | ancestral | |
| France (5) Spain (2) Italy (1) | B.11 | S | I | C591 T, C1405 T, C1531 T, G2458A, C2533 T, T2687C | A543G | ancestral | |
| B.12 | Sweden (14) Russia (1) | B.14 | R | II | A453G, C591 T, C1405 T, C1531 T, A2059C, G2458A, C2533 T, T2687C | ancestral | ancestral |
| Sweden (8) Bulgaria (1) | B.20 | R | II | A453G, C591 T, C1405 T, C1531 T, A2059C, G2458A, C2533 T, T2687C | ancestral | ancestral | |
| Sweden (61) Finland (1) Ukraine (1) | B.21 | R | II | A453G, C591 T, C1405 T, C1531 T, A2059C, G2458A, C2533 T, T2687C | ancestral | ancestral | |
| Sweden (32) Norway (2) | B.22 | R | II | A453G, C591 T, C1405 T, C1531 T, A2059C, G2458A, C2533 T, T2687C | ancestral | ancestral | |
| Sweden (33) Norway (3) | B.23 | R | II | A453G, C591 T, C1405 T, C1531 T, A2059C, G2458A, C2533 T, T2687C | ancestral | ancestral | |
| Slovakia (1) | B.25 | R | II | A453G, C591 T, C1405 T, C1531 T, A2059C, G2458A, C2533 T, T2687C | ancestral | ancestral | |
| Sweden (4) Czech Republic (3) Austria (1) Poland (1) | B.33 | R | II | A453G, C591 T, C1405 T, C1531 T, A2059C, G2458A, C2533 T, T2687C | ancestral | ancestral | |
| Czech Republic (1) Hungary (1) | B.34 | R | II | A453G, C591 T, C1405 T, C1531 T, A2059C, G2458A, C2533 T, T2687C | ancestral | ancestral | |
| Sweden (2) Norway (1) | B.35 | R | II | A453G, C591 T, C1405 T, C1531 T, A2059C, G2458A, C2533 T, T2687C | ancestral | ancestral | |
| Sweden (1) | B.36 | R | II | A453G, C591 T, C1405 T, C1531 T, A2059C, G2458A, C2533 T, T2687C | ancestral | ancestral | |
| Sweden (17) Poland (4) Norway (1) | B.39 | R | II | A453G, C591 T, C1405 T, C1531 T, A2059C, G2458A, C2533 T, T2687C | C309T | ancestral | |
| B.16 | Japan (3) | S | japonica | C433T | ancestral | ancestral | |
| Japan (7) | S | japonica | ancestral | ancestral | ancestral |
| CanSNP group . | Country of origin (n) . | Terminal canSNP . | Erythromycin susceptibility . | Biovar . | rrl (23S rRNA) SNPa . | rplD (L4) SNP . | rplV (L22) SNP . |
|---|---|---|---|---|---|---|---|
| B.4 | Sweden (7) Norway (1) USA (1) | S | I | C591 T, C1405 T, C1531 T, G2458A, C2533 T, T2687C | ancestral | ancestral | |
| B.6 | Sweden (78) Norway (10) | B.7 | S | I | C591 T, C1405 T, C1531 T, G2458A, C2533 T, T2687C | ancestral | ancestral |
| USA (1) | B.8 | S | I | C591 T, C1405 T, C1531 T, G2458A, C2533 T, T2687C | ancestral | ancestral | |
| Sweden (3) | B.10 | S | I | C591 T, C1405 T, C1531 T, G2458A, C2533 T, T2687C | ancestral | ancestral | |
| France (5) Spain (2) Italy (1) | B.11 | S | I | C591 T, C1405 T, C1531 T, G2458A, C2533 T, T2687C | A543G | ancestral | |
| B.12 | Sweden (14) Russia (1) | B.14 | R | II | A453G, C591 T, C1405 T, C1531 T, A2059C, G2458A, C2533 T, T2687C | ancestral | ancestral |
| Sweden (8) Bulgaria (1) | B.20 | R | II | A453G, C591 T, C1405 T, C1531 T, A2059C, G2458A, C2533 T, T2687C | ancestral | ancestral | |
| Sweden (61) Finland (1) Ukraine (1) | B.21 | R | II | A453G, C591 T, C1405 T, C1531 T, A2059C, G2458A, C2533 T, T2687C | ancestral | ancestral | |
| Sweden (32) Norway (2) | B.22 | R | II | A453G, C591 T, C1405 T, C1531 T, A2059C, G2458A, C2533 T, T2687C | ancestral | ancestral | |
| Sweden (33) Norway (3) | B.23 | R | II | A453G, C591 T, C1405 T, C1531 T, A2059C, G2458A, C2533 T, T2687C | ancestral | ancestral | |
| Slovakia (1) | B.25 | R | II | A453G, C591 T, C1405 T, C1531 T, A2059C, G2458A, C2533 T, T2687C | ancestral | ancestral | |
| Sweden (4) Czech Republic (3) Austria (1) Poland (1) | B.33 | R | II | A453G, C591 T, C1405 T, C1531 T, A2059C, G2458A, C2533 T, T2687C | ancestral | ancestral | |
| Czech Republic (1) Hungary (1) | B.34 | R | II | A453G, C591 T, C1405 T, C1531 T, A2059C, G2458A, C2533 T, T2687C | ancestral | ancestral | |
| Sweden (2) Norway (1) | B.35 | R | II | A453G, C591 T, C1405 T, C1531 T, A2059C, G2458A, C2533 T, T2687C | ancestral | ancestral | |
| Sweden (1) | B.36 | R | II | A453G, C591 T, C1405 T, C1531 T, A2059C, G2458A, C2533 T, T2687C | ancestral | ancestral | |
| Sweden (17) Poland (4) Norway (1) | B.39 | R | II | A453G, C591 T, C1405 T, C1531 T, A2059C, G2458A, C2533 T, T2687C | C309T | ancestral | |
| B.16 | Japan (3) | S | japonica | C433T | ancestral | ancestral | |
| Japan (7) | S | japonica | ancestral | ancestral | ancestral |
S, susceptible; R, resistant.
aAll SNP positions are given using E. coli numbering nomenclature.
Result sumary of the canSNP typing, erythromycin susceptibility analysis and SNPs identified in the genes rrl, rplD and rplV for 314 F. tularensis strains
| CanSNP group . | Country of origin (n) . | Terminal canSNP . | Erythromycin susceptibility . | Biovar . | rrl (23S rRNA) SNPa . | rplD (L4) SNP . | rplV (L22) SNP . |
|---|---|---|---|---|---|---|---|
| B.4 | Sweden (7) Norway (1) USA (1) | S | I | C591 T, C1405 T, C1531 T, G2458A, C2533 T, T2687C | ancestral | ancestral | |
| B.6 | Sweden (78) Norway (10) | B.7 | S | I | C591 T, C1405 T, C1531 T, G2458A, C2533 T, T2687C | ancestral | ancestral |
| USA (1) | B.8 | S | I | C591 T, C1405 T, C1531 T, G2458A, C2533 T, T2687C | ancestral | ancestral | |
| Sweden (3) | B.10 | S | I | C591 T, C1405 T, C1531 T, G2458A, C2533 T, T2687C | ancestral | ancestral | |
| France (5) Spain (2) Italy (1) | B.11 | S | I | C591 T, C1405 T, C1531 T, G2458A, C2533 T, T2687C | A543G | ancestral | |
| B.12 | Sweden (14) Russia (1) | B.14 | R | II | A453G, C591 T, C1405 T, C1531 T, A2059C, G2458A, C2533 T, T2687C | ancestral | ancestral |
| Sweden (8) Bulgaria (1) | B.20 | R | II | A453G, C591 T, C1405 T, C1531 T, A2059C, G2458A, C2533 T, T2687C | ancestral | ancestral | |
| Sweden (61) Finland (1) Ukraine (1) | B.21 | R | II | A453G, C591 T, C1405 T, C1531 T, A2059C, G2458A, C2533 T, T2687C | ancestral | ancestral | |
| Sweden (32) Norway (2) | B.22 | R | II | A453G, C591 T, C1405 T, C1531 T, A2059C, G2458A, C2533 T, T2687C | ancestral | ancestral | |
| Sweden (33) Norway (3) | B.23 | R | II | A453G, C591 T, C1405 T, C1531 T, A2059C, G2458A, C2533 T, T2687C | ancestral | ancestral | |
| Slovakia (1) | B.25 | R | II | A453G, C591 T, C1405 T, C1531 T, A2059C, G2458A, C2533 T, T2687C | ancestral | ancestral | |
| Sweden (4) Czech Republic (3) Austria (1) Poland (1) | B.33 | R | II | A453G, C591 T, C1405 T, C1531 T, A2059C, G2458A, C2533 T, T2687C | ancestral | ancestral | |
| Czech Republic (1) Hungary (1) | B.34 | R | II | A453G, C591 T, C1405 T, C1531 T, A2059C, G2458A, C2533 T, T2687C | ancestral | ancestral | |
| Sweden (2) Norway (1) | B.35 | R | II | A453G, C591 T, C1405 T, C1531 T, A2059C, G2458A, C2533 T, T2687C | ancestral | ancestral | |
| Sweden (1) | B.36 | R | II | A453G, C591 T, C1405 T, C1531 T, A2059C, G2458A, C2533 T, T2687C | ancestral | ancestral | |
| Sweden (17) Poland (4) Norway (1) | B.39 | R | II | A453G, C591 T, C1405 T, C1531 T, A2059C, G2458A, C2533 T, T2687C | C309T | ancestral | |
| B.16 | Japan (3) | S | japonica | C433T | ancestral | ancestral | |
| Japan (7) | S | japonica | ancestral | ancestral | ancestral |
| CanSNP group . | Country of origin (n) . | Terminal canSNP . | Erythromycin susceptibility . | Biovar . | rrl (23S rRNA) SNPa . | rplD (L4) SNP . | rplV (L22) SNP . |
|---|---|---|---|---|---|---|---|
| B.4 | Sweden (7) Norway (1) USA (1) | S | I | C591 T, C1405 T, C1531 T, G2458A, C2533 T, T2687C | ancestral | ancestral | |
| B.6 | Sweden (78) Norway (10) | B.7 | S | I | C591 T, C1405 T, C1531 T, G2458A, C2533 T, T2687C | ancestral | ancestral |
| USA (1) | B.8 | S | I | C591 T, C1405 T, C1531 T, G2458A, C2533 T, T2687C | ancestral | ancestral | |
| Sweden (3) | B.10 | S | I | C591 T, C1405 T, C1531 T, G2458A, C2533 T, T2687C | ancestral | ancestral | |
| France (5) Spain (2) Italy (1) | B.11 | S | I | C591 T, C1405 T, C1531 T, G2458A, C2533 T, T2687C | A543G | ancestral | |
| B.12 | Sweden (14) Russia (1) | B.14 | R | II | A453G, C591 T, C1405 T, C1531 T, A2059C, G2458A, C2533 T, T2687C | ancestral | ancestral |
| Sweden (8) Bulgaria (1) | B.20 | R | II | A453G, C591 T, C1405 T, C1531 T, A2059C, G2458A, C2533 T, T2687C | ancestral | ancestral | |
| Sweden (61) Finland (1) Ukraine (1) | B.21 | R | II | A453G, C591 T, C1405 T, C1531 T, A2059C, G2458A, C2533 T, T2687C | ancestral | ancestral | |
| Sweden (32) Norway (2) | B.22 | R | II | A453G, C591 T, C1405 T, C1531 T, A2059C, G2458A, C2533 T, T2687C | ancestral | ancestral | |
| Sweden (33) Norway (3) | B.23 | R | II | A453G, C591 T, C1405 T, C1531 T, A2059C, G2458A, C2533 T, T2687C | ancestral | ancestral | |
| Slovakia (1) | B.25 | R | II | A453G, C591 T, C1405 T, C1531 T, A2059C, G2458A, C2533 T, T2687C | ancestral | ancestral | |
| Sweden (4) Czech Republic (3) Austria (1) Poland (1) | B.33 | R | II | A453G, C591 T, C1405 T, C1531 T, A2059C, G2458A, C2533 T, T2687C | ancestral | ancestral | |
| Czech Republic (1) Hungary (1) | B.34 | R | II | A453G, C591 T, C1405 T, C1531 T, A2059C, G2458A, C2533 T, T2687C | ancestral | ancestral | |
| Sweden (2) Norway (1) | B.35 | R | II | A453G, C591 T, C1405 T, C1531 T, A2059C, G2458A, C2533 T, T2687C | ancestral | ancestral | |
| Sweden (1) | B.36 | R | II | A453G, C591 T, C1405 T, C1531 T, A2059C, G2458A, C2533 T, T2687C | ancestral | ancestral | |
| Sweden (17) Poland (4) Norway (1) | B.39 | R | II | A453G, C591 T, C1405 T, C1531 T, A2059C, G2458A, C2533 T, T2687C | C309T | ancestral | |
| B.16 | Japan (3) | S | japonica | C433T | ancestral | ancestral | |
| Japan (7) | S | japonica | ancestral | ancestral | ancestral |
S, susceptible; R, resistant.
aAll SNP positions are given using E. coli numbering nomenclature.
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