Table 1. Open in new tab Genome-wide...

Marker	Position SCHU S4, NC_006570.2	SNP state	Gene	Reference
B.1	83745	A	G	—	50
B.2	5162	A	C	FTT_0006	18
B.3	470841	A	G	FTT_0453c	18
B.4	823672	T	A	FTT_0804	18
B.5	1853655	T	C	FTT_1766	18
B.6	713647	A	G	FTT_0694	18
B.7	599474	C	T	fopA1	18
B.8	686382	T	G	FTT_0669	18
B.9	943135	G	A	FTT_0931	18
B.10	387537	G	A	FTT_0385	18
B.11	1282029	G	G	nadE	18
B.12	109781	T	A	FTT_0105c	18
B.13	948766	G	A	bioB	18
B.14^a	—	—	—	—	18
B.15	1113814	G	A	FTT_1103	17
B.16	608245	T	G	aroA	17
B.17	1743207	A	C	ribA	17
B.18	1756102	A	G	FTT_1686c	17
B.19	1373999	A	C	FTT_1343c	17
B.20	1396082, 1789417	C	T	pdpC1, pdpC2	17
B.21	701319	T	C	sthA	17
B.22	1113318	A	G	FTT_1103	17
B.23	253120	A	C	FTT_0240	17
B.24	1419961	C	A	fabH	17
B.25	1534460	A	G	aceF	17
B.26	1484645	A	C	FTT_1437c	19
B.27	1329722	T	G	engA	19
B.28	212729	T	G	FTT_0195c	19
B.29	1185519	A	G	hsdM	19
B.30	928335	T	G	FTT_0918	19
B.31	1634565	A	G	FTT_1573c	19
B.32	283540	A	G	FTT_0268	19
B.33	78382	T	C	SucA	20
B.34	766614	A	G	FTT_0743	20
B.35	239479	A	C	ybgK	20
B.36	1599292	A	C	FTT_1536c	20
B.37	318602	T	C	lldD1	20
B.38	166885	C	T	metK	20
B.39	1705469	A	G	FTT_1640c	23
B.40	307567	A	C	FTT_0293a	23
B.41	520628	T	C	FTT_0501c	23
B.42	968180	A	C	gor	23
B.43	136603	T	G	oppC	23

Marker	Position SCHU S4, NC_006570.2	SNP state	Gene	Reference
B.1	83745	A	G	—	50
B.2	5162	A	C	FTT_0006	18
B.3	470841	A	G	FTT_0453c	18
B.4	823672	T	A	FTT_0804	18
B.5	1853655	T	C	FTT_1766	18
B.6	713647	A	G	FTT_0694	18
B.7	599474	C	T	fopA1	18
B.8	686382	T	G	FTT_0669	18
B.9	943135	G	A	FTT_0931	18
B.10	387537	G	A	FTT_0385	18
B.11	1282029	G	G	nadE	18
B.12	109781	T	A	FTT_0105c	18
B.13	948766	G	A	bioB	18
B.14^a	—	—	—	—	18
B.15	1113814	G	A	FTT_1103	17
B.16	608245	T	G	aroA	17
B.17	1743207	A	C	ribA	17
B.18	1756102	A	G	FTT_1686c	17
B.19	1373999	A	C	FTT_1343c	17
B.20	1396082, 1789417	C	T	pdpC1, pdpC2	17
B.21	701319	T	C	sthA	17
B.22	1113318	A	G	FTT_1103	17
B.23	253120	A	C	FTT_0240	17
B.24	1419961	C	A	fabH	17
B.25	1534460	A	G	aceF	17
B.26	1484645	A	C	FTT_1437c	19
B.27	1329722	T	G	engA	19
B.28	212729	T	G	FTT_0195c	19
B.29	1185519	A	G	hsdM	19
B.30	928335	T	G	FTT_0918	19
B.31	1634565	A	G	FTT_1573c	19
B.32	283540	A	G	FTT_0268	19
B.33	78382	T	C	SucA	20
B.34	766614	A	G	FTT_0743	20
B.35	239479	A	C	ybgK	20
B.36	1599292	A	C	FTT_1536c	20
B.37	318602	T	C	lldD1	20
B.38	166885	C	T	metK	20
B.39	1705469	A	G	FTT_1640c	23
B.40	307567	A	C	FTT_0293a	23
B.41	520628	T	C	FTT_0501c	23
B.42	968180	A	C	gor	23
B.43	136603	T	G	oppC	23

Table 1.

Genome-wide canSNPs used for phylogenetic classification

Marker	Position SCHU S4, NC_006570.2	SNP state		Gene	Reference
Marker	Position SCHU S4, NC_006570.2	derived	ancestral	Gene	Reference
B.1	83745	A	G	—	50
B.2	5162	A	C	FTT_0006	18
B.3	470841	A	G	FTT_0453c	18
B.4	823672	T	A	FTT_0804	18
B.5	1853655	T	C	FTT_1766	18
B.6	713647	A	G	FTT_0694	18
B.7	599474	C	T	fopA1	18
B.8	686382	T	G	FTT_0669	18
B.9	943135	G	A	FTT_0931	18
B.10	387537	G	A	FTT_0385	18
B.11	1282029	G	G	nadE	18
B.12	109781	T	A	FTT_0105c	18
B.13	948766	G	A	bioB	18
B.14^a	—	—	—	—	18
B.15	1113814	G	A	FTT_1103	17
B.16	608245	T	G	aroA	17
B.17	1743207	A	C	ribA	17
B.18	1756102	A	G	FTT_1686c	17
B.19	1373999	A	C	FTT_1343c	17
B.20	1396082, 1789417	C	T	pdpC1, pdpC2	17
B.21	701319	T	C	sthA	17
B.22	1113318	A	G	FTT_1103	17
B.23	253120	A	C	FTT_0240	17
B.24	1419961	C	A	fabH	17
B.25	1534460	A	G	aceF	17
B.26	1484645	A	C	FTT_1437c	19
B.27	1329722	T	G	engA	19
B.28	212729	T	G	FTT_0195c	19
B.29	1185519	A	G	hsdM	19
B.30	928335	T	G	FTT_0918	19
B.31	1634565	A	G	FTT_1573c	19
B.32	283540	A	G	FTT_0268	19
B.33	78382	T	C	SucA	20
B.34	766614	A	G	FTT_0743	20
B.35	239479	A	C	ybgK	20
B.36	1599292	A	C	FTT_1536c	20
B.37	318602	T	C	lldD1	20
B.38	166885	C	T	metK	20
B.39	1705469	A	G	FTT_1640c	23
B.40	307567	A	C	FTT_0293a	23
B.41	520628	T	C	FTT_0501c	23
B.42	968180	A	C	gor	23
B.43	136603	T	G	oppC	23

Marker	Position SCHU S4, NC_006570.2	SNP state		Gene	Reference
Marker	Position SCHU S4, NC_006570.2	derived	ancestral	Gene	Reference
B.1	83745	A	G	—	50
B.2	5162	A	C	FTT_0006	18
B.3	470841	A	G	FTT_0453c	18
B.4	823672	T	A	FTT_0804	18
B.5	1853655	T	C	FTT_1766	18
B.6	713647	A	G	FTT_0694	18
B.7	599474	C	T	fopA1	18
B.8	686382	T	G	FTT_0669	18
B.9	943135	G	A	FTT_0931	18
B.10	387537	G	A	FTT_0385	18
B.11	1282029	G	G	nadE	18
B.12	109781	T	A	FTT_0105c	18
B.13	948766	G	A	bioB	18
B.14^a	—	—	—	—	18
B.15	1113814	G	A	FTT_1103	17
B.16	608245	T	G	aroA	17
B.17	1743207	A	C	ribA	17
B.18	1756102	A	G	FTT_1686c	17
B.19	1373999	A	C	FTT_1343c	17
B.20	1396082, 1789417	C	T	pdpC1, pdpC2	17
B.21	701319	T	C	sthA	17
B.22	1113318	A	G	FTT_1103	17
B.23	253120	A	C	FTT_0240	17
B.24	1419961	C	A	fabH	17
B.25	1534460	A	G	aceF	17
B.26	1484645	A	C	FTT_1437c	19
B.27	1329722	T	G	engA	19
B.28	212729	T	G	FTT_0195c	19
B.29	1185519	A	G	hsdM	19
B.30	928335	T	G	FTT_0918	19
B.31	1634565	A	G	FTT_1573c	19
B.32	283540	A	G	FTT_0268	19
B.33	78382	T	C	SucA	20
B.34	766614	A	G	FTT_0743	20
B.35	239479	A	C	ybgK	20
B.36	1599292	A	C	FTT_1536c	20
B.37	318602	T	C	lldD1	20
B.38	166885	C	T	metK	20
B.39	1705469	A	G	FTT_1640c	23
B.40	307567	A	C	FTT_0293a	23
B.41	520628	T	C	FTT_0501c	23
B.42	968180	A	C	gor	23
B.43	136603	T	G	oppC	23

^aThe genome position of this SNP was not published.