Table 1 Open in new tab EST Assembly and... | Oxford Academic

Table 1

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EST Assembly and Gene Family Statistics for 18 Species of Compositae

Species	ESTs	Unigenes	% Unigenes Duplicated	Gene Family Count	Duplications With K_s < 2
Gerbera hybrida	16,998	8,438	12.1a	7,657	293
Centaurea maculosa	39,957	21,432	37.1	15,900	3,554
Centaurea solstitialis	40,406	23,267	37.9	17,062	3,954
Carthamus tinctorius	40,875	19,963	39.2	14,327	3,284
Cichorium endivia	30,170	19,480	31.0	15,269	2,508
Cichorium intybus	41,704	22,674	33.2	17,255	2,895
Taraxacum officinale	41,278	16,858	31.9	12,564	1,651
Lactuca sativa	80,735	27,907	32.4	21,018	3,013
Lactuca serriola	55,452	21,140	25.6	16,788	1,587
Lactuca saligna	30,689	12,448	30.6	9,439	1,091
Lactuca perennis	29,118	12,129	30.0	9,333	1,192
Lactuca virosa	30,056	12,732	27.8	9,924	998
Helianthus annuus	93,428	37,222	30.0	27,725	3,500
Helianthus argophyllus	35,702	17,845	27.5	14,586	2,018
Helianthus ciliaris	21,589	15,158	28.6	12,382	2,037
Helianthus exilis	33,958	20,101	33.4	15,490	2,973
Helianthus petiolaris	27,472	13,655	30.2	10,557	1,519
Helianthus tuberosus	40,361	22,013	39.2	16,030	4,077

Species	ESTs	Unigenes	% Unigenes Duplicated	Gene Family Count	Duplications With K_s < 2
Gerbera hybrida	16,998	8,438	12.1a	7,657	293
Centaurea maculosa	39,957	21,432	37.1	15,900	3,554
Centaurea solstitialis	40,406	23,267	37.9	17,062	3,954
Carthamus tinctorius	40,875	19,963	39.2	14,327	3,284
Cichorium endivia	30,170	19,480	31.0	15,269	2,508
Cichorium intybus	41,704	22,674	33.2	17,255	2,895
Taraxacum officinale	41,278	16,858	31.9	12,564	1,651
Lactuca sativa	80,735	27,907	32.4	21,018	3,013
Lactuca serriola	55,452	21,140	25.6	16,788	1,587
Lactuca saligna	30,689	12,448	30.6	9,439	1,091
Lactuca perennis	29,118	12,129	30.0	9,333	1,192
Lactuca virosa	30,056	12,732	27.8	9,924	998
Helianthus annuus	93,428	37,222	30.0	27,725	3,500
Helianthus argophyllus	35,702	17,845	27.5	14,586	2,018
Helianthus ciliaris	21,589	15,158	28.6	12,382	2,037
Helianthus exilis	33,958	20,101	33.4	15,490	2,973
Helianthus petiolaris	27,472	13,655	30.2	10,557	1,519
Helianthus tuberosus	40,361	22,013	39.2	16,030	4,077

Lower percentage of duplicate genes in Gerbera relative to other taxa is likely because this is a single tissue EST collection.

Table 1

Open in new tab

EST Assembly and Gene Family Statistics for 18 Species of Compositae

Species	ESTs	Unigenes	% Unigenes Duplicated	Gene Family Count	Duplications With K_s < 2
Gerbera hybrida	16,998	8,438	12.1a	7,657	293
Centaurea maculosa	39,957	21,432	37.1	15,900	3,554
Centaurea solstitialis	40,406	23,267	37.9	17,062	3,954
Carthamus tinctorius	40,875	19,963	39.2	14,327	3,284
Cichorium endivia	30,170	19,480	31.0	15,269	2,508
Cichorium intybus	41,704	22,674	33.2	17,255	2,895
Taraxacum officinale	41,278	16,858	31.9	12,564	1,651
Lactuca sativa	80,735	27,907	32.4	21,018	3,013
Lactuca serriola	55,452	21,140	25.6	16,788	1,587
Lactuca saligna	30,689	12,448	30.6	9,439	1,091
Lactuca perennis	29,118	12,129	30.0	9,333	1,192
Lactuca virosa	30,056	12,732	27.8	9,924	998
Helianthus annuus	93,428	37,222	30.0	27,725	3,500
Helianthus argophyllus	35,702	17,845	27.5	14,586	2,018
Helianthus ciliaris	21,589	15,158	28.6	12,382	2,037
Helianthus exilis	33,958	20,101	33.4	15,490	2,973
Helianthus petiolaris	27,472	13,655	30.2	10,557	1,519
Helianthus tuberosus	40,361	22,013	39.2	16,030	4,077

Species	ESTs	Unigenes	% Unigenes Duplicated	Gene Family Count	Duplications With K_s < 2
Gerbera hybrida	16,998	8,438	12.1a	7,657	293
Centaurea maculosa	39,957	21,432	37.1	15,900	3,554
Centaurea solstitialis	40,406	23,267	37.9	17,062	3,954
Carthamus tinctorius	40,875	19,963	39.2	14,327	3,284
Cichorium endivia	30,170	19,480	31.0	15,269	2,508
Cichorium intybus	41,704	22,674	33.2	17,255	2,895
Taraxacum officinale	41,278	16,858	31.9	12,564	1,651
Lactuca sativa	80,735	27,907	32.4	21,018	3,013
Lactuca serriola	55,452	21,140	25.6	16,788	1,587
Lactuca saligna	30,689	12,448	30.6	9,439	1,091
Lactuca perennis	29,118	12,129	30.0	9,333	1,192
Lactuca virosa	30,056	12,732	27.8	9,924	998
Helianthus annuus	93,428	37,222	30.0	27,725	3,500
Helianthus argophyllus	35,702	17,845	27.5	14,586	2,018
Helianthus ciliaris	21,589	15,158	28.6	12,382	2,037
Helianthus exilis	33,958	20,101	33.4	15,490	2,973
Helianthus petiolaris	27,472	13,655	30.2	10,557	1,519
Helianthus tuberosus	40,361	22,013	39.2	16,030	4,077

Lower percentage of duplicate genes in Gerbera relative to other taxa is likely because this is a single tissue EST collection.