Table 2.

Summary of the Over-Represented GO Terms in Different Lineages.

Lineage/Gene ClassCategory/GO IDGO TermAnnotatedSignificantExpectedP ValueCorrected P Value
House finch/FEGBP/GO:0006072Glycerol-3-phosphate metabolic process940.112.20e−61.18e−2
House finch/FEGBP/GO:0006071Glycerol metabolic process1640.193.00e−55.35e−2
House finch/FEGBP/GO:0019400Alditol metabolic process1640.193.00e−55.35e−2
House finch/FEGCC/GO:0009331Glycerol-3-phosphate dehydrogenase complex730.097.00e−55.12e−2
Ancestral passerine/FEGMF/GO:0046872Metal ion binding6664925.579.40e−75.58e−4
Ancestral passerine/FEGMF/GO:0043167Ion binding6674925.619.90e−75.58e−4
Ancestral passerine/FEGMF/GO:0043169Cation binding6674925.619.90e−75.58e−4
Ancestral passerine/FEGMF/GO:0004872Receptor activity168186.455.40e−52.28e−2
Ancestral passerine/FEGMF/GO:0008270Zinc ion binding4413316.937.80e−52.64e−2
Ancestral passerine/FEGMF/GO:0046914Transition metal ion binding5113619.621.20e−42.90e−2
Ancestral passerine/FEGMF/GO:0005488Binding2,803123107.621.20e−42.90e−2
Lineage/Gene ClassCategory/GO IDGO TermAnnotatedSignificantExpectedP ValueCorrected P Value
House finch/FEGBP/GO:0006072Glycerol-3-phosphate metabolic process940.112.20e−61.18e−2
House finch/FEGBP/GO:0006071Glycerol metabolic process1640.193.00e−55.35e−2
House finch/FEGBP/GO:0019400Alditol metabolic process1640.193.00e−55.35e−2
House finch/FEGCC/GO:0009331Glycerol-3-phosphate dehydrogenase complex730.097.00e−55.12e−2
Ancestral passerine/FEGMF/GO:0046872Metal ion binding6664925.579.40e−75.58e−4
Ancestral passerine/FEGMF/GO:0043167Ion binding6674925.619.90e−75.58e−4
Ancestral passerine/FEGMF/GO:0043169Cation binding6674925.619.90e−75.58e−4
Ancestral passerine/FEGMF/GO:0004872Receptor activity168186.455.40e−52.28e−2
Ancestral passerine/FEGMF/GO:0008270Zinc ion binding4413316.937.80e−52.64e−2
Ancestral passerine/FEGMF/GO:0046914Transition metal ion binding5113619.621.20e−42.90e−2
Ancestral passerine/FEGMF/GO:0005488Binding2,803123107.621.20e−42.90e−2

Note.—Only genes from the FEG class were significant and only in the house finch and the ancestral passerine lineages. Columns represent the given GO category and identification number (category/GO ID), GO term, the number of annotated genes within that term (annotated), the number of FEG detected (significant), the number of expected genes (see Extended Materials and Methods in supplementary information, Supplementary Material online) from the specific GO class (Expected), the significance level from the Fisher’s exact test (P value) and the level of significance after correcting for multiple tests with false discovery rate (FDR) <0.05 (corrected P value). MF, molecular function; CC, cellular component; BP, biological process.

Table 2.

Summary of the Over-Represented GO Terms in Different Lineages.

Lineage/Gene ClassCategory/GO IDGO TermAnnotatedSignificantExpectedP ValueCorrected P Value
House finch/FEGBP/GO:0006072Glycerol-3-phosphate metabolic process940.112.20e−61.18e−2
House finch/FEGBP/GO:0006071Glycerol metabolic process1640.193.00e−55.35e−2
House finch/FEGBP/GO:0019400Alditol metabolic process1640.193.00e−55.35e−2
House finch/FEGCC/GO:0009331Glycerol-3-phosphate dehydrogenase complex730.097.00e−55.12e−2
Ancestral passerine/FEGMF/GO:0046872Metal ion binding6664925.579.40e−75.58e−4
Ancestral passerine/FEGMF/GO:0043167Ion binding6674925.619.90e−75.58e−4
Ancestral passerine/FEGMF/GO:0043169Cation binding6674925.619.90e−75.58e−4
Ancestral passerine/FEGMF/GO:0004872Receptor activity168186.455.40e−52.28e−2
Ancestral passerine/FEGMF/GO:0008270Zinc ion binding4413316.937.80e−52.64e−2
Ancestral passerine/FEGMF/GO:0046914Transition metal ion binding5113619.621.20e−42.90e−2
Ancestral passerine/FEGMF/GO:0005488Binding2,803123107.621.20e−42.90e−2
Lineage/Gene ClassCategory/GO IDGO TermAnnotatedSignificantExpectedP ValueCorrected P Value
House finch/FEGBP/GO:0006072Glycerol-3-phosphate metabolic process940.112.20e−61.18e−2
House finch/FEGBP/GO:0006071Glycerol metabolic process1640.193.00e−55.35e−2
House finch/FEGBP/GO:0019400Alditol metabolic process1640.193.00e−55.35e−2
House finch/FEGCC/GO:0009331Glycerol-3-phosphate dehydrogenase complex730.097.00e−55.12e−2
Ancestral passerine/FEGMF/GO:0046872Metal ion binding6664925.579.40e−75.58e−4
Ancestral passerine/FEGMF/GO:0043167Ion binding6674925.619.90e−75.58e−4
Ancestral passerine/FEGMF/GO:0043169Cation binding6674925.619.90e−75.58e−4
Ancestral passerine/FEGMF/GO:0004872Receptor activity168186.455.40e−52.28e−2
Ancestral passerine/FEGMF/GO:0008270Zinc ion binding4413316.937.80e−52.64e−2
Ancestral passerine/FEGMF/GO:0046914Transition metal ion binding5113619.621.20e−42.90e−2
Ancestral passerine/FEGMF/GO:0005488Binding2,803123107.621.20e−42.90e−2

Note.—Only genes from the FEG class were significant and only in the house finch and the ancestral passerine lineages. Columns represent the given GO category and identification number (category/GO ID), GO term, the number of annotated genes within that term (annotated), the number of FEG detected (significant), the number of expected genes (see Extended Materials and Methods in supplementary information, Supplementary Material online) from the specific GO class (Expected), the significance level from the Fisher’s exact test (P value) and the level of significance after correcting for multiple tests with false discovery rate (FDR) <0.05 (corrected P value). MF, molecular function; CC, cellular component; BP, biological process.

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