Table 1.
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Comparison of the accuracy of breakpoint intervals (BPIs) predicted by jpHMM and the accuracy of BPI of fixed length

ThresholdBPI length
Percentage of BP found using
tBPIAverageMin/MaxPpostFixed BPI length
0.7516.120/11354.1759.44
0.8522.460/12168.0666.67
0.9026.892/13574.7269.72
0.9534.052/20281.1175.56
0.9948.585/23392.5082.78
0.999984.7711/49298.0692.50
ThresholdBPI length
Percentage of BP found using
tBPIAverageMin/MaxPpostFixed BPI length
0.7516.120/11354.1759.44
0.8522.460/12168.0666.67
0.9026.892/13574.7269.72
0.9534.052/20281.1175.56
0.9948.585/23392.5082.78
0.999984.7711/49298.0692.50

Results are shown for the first data set. In Column 1, the threshold tBPI is given. The average length of the BPI defined by tBPI is given in Column 2, the minimal and maximal length in Column 3. In Column 4, the percentage of real breakpoints detected with these BPIs is shown and in Column 5, the percentage of breakpoints using the average length of the predicted BPI as fixed BPI length (naïve method). For each threshold, the highest value is marked in bold face.

Table 1.
Open in new tab

Comparison of the accuracy of breakpoint intervals (BPIs) predicted by jpHMM and the accuracy of BPI of fixed length

ThresholdBPI length
Percentage of BP found using
tBPIAverageMin/MaxPpostFixed BPI length
0.7516.120/11354.1759.44
0.8522.460/12168.0666.67
0.9026.892/13574.7269.72
0.9534.052/20281.1175.56
0.9948.585/23392.5082.78
0.999984.7711/49298.0692.50
ThresholdBPI length
Percentage of BP found using
tBPIAverageMin/MaxPpostFixed BPI length
0.7516.120/11354.1759.44
0.8522.460/12168.0666.67
0.9026.892/13574.7269.72
0.9534.052/20281.1175.56
0.9948.585/23392.5082.78
0.999984.7711/49298.0692.50

Results are shown for the first data set. In Column 1, the threshold tBPI is given. The average length of the BPI defined by tBPI is given in Column 2, the minimal and maximal length in Column 3. In Column 4, the percentage of real breakpoints detected with these BPIs is shown and in Column 5, the percentage of breakpoints using the average length of the predicted BPI as fixed BPI length (naïve method). For each threshold, the highest value is marked in bold face.

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