Table 1.

The NBRP databases

Database nameTaxonWild/ inbred/ landraceMutantsPlasmid/ vector/ clonesMap (Physical or Linkage)Gene (mutated genes/all genes)PhenotypeSNPsBlast serviceImagesExternal DB (collaborating DB)[reference]Featured contents/ services
1NBRP-MacaqueVertebrata-mammalia-primateoo
2NBRP-Mouse(Riken BRC)Vertebrata-mammalia- murinae-musoooPMooooMGI[3], (IMSR, JMSR;http://www.shigen.nig.ac.jp/mouse/jmsr/)
3NBRP-RatMammalia-murinae-rattusoooPMooooRGD[4], (JMSR)graphical display of the phenotype data
4NBRP-XenopusVertebrata-amphibiaooo
5NBRP-ZebrafishVertebrata-actinopterygii-cypriniformes-daniooMooZFIN[5]
6NBRP-MedakaVertebrata-actinopterygii-beloniformes-oryziasoooPMoooatlas, phylogenetic tree
7NBRP-CionaAscidiacea-cionaooMoo(Ghost,[6] CIPRO;http://cipro.ibio.jp/new/)
8NBRP-Drosophila (DGRC)Arthropoda-insecta-diptera-drosophilidaeoooPAooooFlyBase[7]
9NBRP-Silkworm (SilkwormBase)Arthropoda-insecta-lepidoptera-bombyxoLMoolaeva period time
10NBRP-C. elegansPseudocoelomata-nematodaoMWormbase[8]
11NBRP-Rice (Oryzabase)Viridiplantae-poaceae-oryzeaeooP,LAoooGramene[9], IRRI; http://beta.irri.org/index.php/Home/Welcome/Frontpage.htmldevelopmental stage
12NBRP-BarleyViridiplantae-poaceae-triticeae-hordeumooLooophenotype data
13NBRP-Wheat (KOMUGI)Viridiplantae-poaceae-triticeaeoooLAooo(TriFLDB[10])gene catalogue
14NBRP-Arabidopsis (Riken BRC)Viridiplantae-brassicales-arabidopsisooooo
15NBRP-ChrysanthemumViridiplantae-asterids-chrysanthemumooo
16NBRP-Morning gloryViridiplantae-solanales-ipomoeeaeooLMoo
17NBRP-Lotus/Glycine (LegumeBase)Fabales-fabaceaeoooLMoo(miyakogusa.jp[11], Soybean Full-length cDNA database[12])
18NBRP-TomatoViridiplantae-solanales-lycopersicono(KafTom;http://www.pgb.kazusa.or.jp/kaftom/, MiBASE[13])
19NBRP-Algae14 phyla (eukaryota and bacteria)ooophotograph, phylogenetic tree
20NBRP-YeastFungi-ascomycotaooPASGD[14], geneDB[15]
21NBRP-Cellular slime moldMycetozoa-dictyostelliidaodictyBase[16]
22NBRP-Prokaryote E. coliBacteria-proteobacteriaooPAoPEC[17], EcoGene[18], EcoCyc[19], COG[20], NCBI[1], SwissProt[21], GTOP[22], KEGG[23], InterPro[24]
23NBRP-Prokaryote B. subtilisBacteria-firmicutes-bacilli-bacillaceaeoM
24NBRP-Pathogenic microbesBacteria and protozoaooo
25NBRP-General microbes (Riken BRC, JCM)Bacteriao
Database nameTaxonWild/ inbred/ landraceMutantsPlasmid/ vector/ clonesMap (Physical or Linkage)Gene (mutated genes/all genes)PhenotypeSNPsBlast serviceImagesExternal DB (collaborating DB)[reference]Featured contents/ services
1NBRP-MacaqueVertebrata-mammalia-primateoo
2NBRP-Mouse(Riken BRC)Vertebrata-mammalia- murinae-musoooPMooooMGI[3], (IMSR, JMSR;http://www.shigen.nig.ac.jp/mouse/jmsr/)
3NBRP-RatMammalia-murinae-rattusoooPMooooRGD[4], (JMSR)graphical display of the phenotype data
4NBRP-XenopusVertebrata-amphibiaooo
5NBRP-ZebrafishVertebrata-actinopterygii-cypriniformes-daniooMooZFIN[5]
6NBRP-MedakaVertebrata-actinopterygii-beloniformes-oryziasoooPMoooatlas, phylogenetic tree
7NBRP-CionaAscidiacea-cionaooMoo(Ghost,[6] CIPRO;http://cipro.ibio.jp/new/)
8NBRP-Drosophila (DGRC)Arthropoda-insecta-diptera-drosophilidaeoooPAooooFlyBase[7]
9NBRP-Silkworm (SilkwormBase)Arthropoda-insecta-lepidoptera-bombyxoLMoolaeva period time
10NBRP-C. elegansPseudocoelomata-nematodaoMWormbase[8]
11NBRP-Rice (Oryzabase)Viridiplantae-poaceae-oryzeaeooP,LAoooGramene[9], IRRI; http://beta.irri.org/index.php/Home/Welcome/Frontpage.htmldevelopmental stage
12NBRP-BarleyViridiplantae-poaceae-triticeae-hordeumooLooophenotype data
13NBRP-Wheat (KOMUGI)Viridiplantae-poaceae-triticeaeoooLAooo(TriFLDB[10])gene catalogue
14NBRP-Arabidopsis (Riken BRC)Viridiplantae-brassicales-arabidopsisooooo
15NBRP-ChrysanthemumViridiplantae-asterids-chrysanthemumooo
16NBRP-Morning gloryViridiplantae-solanales-ipomoeeaeooLMoo
17NBRP-Lotus/Glycine (LegumeBase)Fabales-fabaceaeoooLMoo(miyakogusa.jp[11], Soybean Full-length cDNA database[12])
18NBRP-TomatoViridiplantae-solanales-lycopersicono(KafTom;http://www.pgb.kazusa.or.jp/kaftom/, MiBASE[13])
19NBRP-Algae14 phyla (eukaryota and bacteria)ooophotograph, phylogenetic tree
20NBRP-YeastFungi-ascomycotaooPASGD[14], geneDB[15]
21NBRP-Cellular slime moldMycetozoa-dictyostelliidaodictyBase[16]
22NBRP-Prokaryote E. coliBacteria-proteobacteriaooPAoPEC[17], EcoGene[18], EcoCyc[19], COG[20], NCBI[1], SwissProt[21], GTOP[22], KEGG[23], InterPro[24]
23NBRP-Prokaryote B. subtilisBacteria-firmicutes-bacilli-bacillaceaeoM
24NBRP-Pathogenic microbesBacteria and protozoaooo
25NBRP-General microbes (Riken BRC, JCM)Bacteriao
Table 1.

The NBRP databases

Database nameTaxonWild/ inbred/ landraceMutantsPlasmid/ vector/ clonesMap (Physical or Linkage)Gene (mutated genes/all genes)PhenotypeSNPsBlast serviceImagesExternal DB (collaborating DB)[reference]Featured contents/ services
1NBRP-MacaqueVertebrata-mammalia-primateoo
2NBRP-Mouse(Riken BRC)Vertebrata-mammalia- murinae-musoooPMooooMGI[3], (IMSR, JMSR;http://www.shigen.nig.ac.jp/mouse/jmsr/)
3NBRP-RatMammalia-murinae-rattusoooPMooooRGD[4], (JMSR)graphical display of the phenotype data
4NBRP-XenopusVertebrata-amphibiaooo
5NBRP-ZebrafishVertebrata-actinopterygii-cypriniformes-daniooMooZFIN[5]
6NBRP-MedakaVertebrata-actinopterygii-beloniformes-oryziasoooPMoooatlas, phylogenetic tree
7NBRP-CionaAscidiacea-cionaooMoo(Ghost,[6] CIPRO;http://cipro.ibio.jp/new/)
8NBRP-Drosophila (DGRC)Arthropoda-insecta-diptera-drosophilidaeoooPAooooFlyBase[7]
9NBRP-Silkworm (SilkwormBase)Arthropoda-insecta-lepidoptera-bombyxoLMoolaeva period time
10NBRP-C. elegansPseudocoelomata-nematodaoMWormbase[8]
11NBRP-Rice (Oryzabase)Viridiplantae-poaceae-oryzeaeooP,LAoooGramene[9], IRRI; http://beta.irri.org/index.php/Home/Welcome/Frontpage.htmldevelopmental stage
12NBRP-BarleyViridiplantae-poaceae-triticeae-hordeumooLooophenotype data
13NBRP-Wheat (KOMUGI)Viridiplantae-poaceae-triticeaeoooLAooo(TriFLDB[10])gene catalogue
14NBRP-Arabidopsis (Riken BRC)Viridiplantae-brassicales-arabidopsisooooo
15NBRP-ChrysanthemumViridiplantae-asterids-chrysanthemumooo
16NBRP-Morning gloryViridiplantae-solanales-ipomoeeaeooLMoo
17NBRP-Lotus/Glycine (LegumeBase)Fabales-fabaceaeoooLMoo(miyakogusa.jp[11], Soybean Full-length cDNA database[12])
18NBRP-TomatoViridiplantae-solanales-lycopersicono(KafTom;http://www.pgb.kazusa.or.jp/kaftom/, MiBASE[13])
19NBRP-Algae14 phyla (eukaryota and bacteria)ooophotograph, phylogenetic tree
20NBRP-YeastFungi-ascomycotaooPASGD[14], geneDB[15]
21NBRP-Cellular slime moldMycetozoa-dictyostelliidaodictyBase[16]
22NBRP-Prokaryote E. coliBacteria-proteobacteriaooPAoPEC[17], EcoGene[18], EcoCyc[19], COG[20], NCBI[1], SwissProt[21], GTOP[22], KEGG[23], InterPro[24]
23NBRP-Prokaryote B. subtilisBacteria-firmicutes-bacilli-bacillaceaeoM
24NBRP-Pathogenic microbesBacteria and protozoaooo
25NBRP-General microbes (Riken BRC, JCM)Bacteriao
Database nameTaxonWild/ inbred/ landraceMutantsPlasmid/ vector/ clonesMap (Physical or Linkage)Gene (mutated genes/all genes)PhenotypeSNPsBlast serviceImagesExternal DB (collaborating DB)[reference]Featured contents/ services
1NBRP-MacaqueVertebrata-mammalia-primateoo
2NBRP-Mouse(Riken BRC)Vertebrata-mammalia- murinae-musoooPMooooMGI[3], (IMSR, JMSR;http://www.shigen.nig.ac.jp/mouse/jmsr/)
3NBRP-RatMammalia-murinae-rattusoooPMooooRGD[4], (JMSR)graphical display of the phenotype data
4NBRP-XenopusVertebrata-amphibiaooo
5NBRP-ZebrafishVertebrata-actinopterygii-cypriniformes-daniooMooZFIN[5]
6NBRP-MedakaVertebrata-actinopterygii-beloniformes-oryziasoooPMoooatlas, phylogenetic tree
7NBRP-CionaAscidiacea-cionaooMoo(Ghost,[6] CIPRO;http://cipro.ibio.jp/new/)
8NBRP-Drosophila (DGRC)Arthropoda-insecta-diptera-drosophilidaeoooPAooooFlyBase[7]
9NBRP-Silkworm (SilkwormBase)Arthropoda-insecta-lepidoptera-bombyxoLMoolaeva period time
10NBRP-C. elegansPseudocoelomata-nematodaoMWormbase[8]
11NBRP-Rice (Oryzabase)Viridiplantae-poaceae-oryzeaeooP,LAoooGramene[9], IRRI; http://beta.irri.org/index.php/Home/Welcome/Frontpage.htmldevelopmental stage
12NBRP-BarleyViridiplantae-poaceae-triticeae-hordeumooLooophenotype data
13NBRP-Wheat (KOMUGI)Viridiplantae-poaceae-triticeaeoooLAooo(TriFLDB[10])gene catalogue
14NBRP-Arabidopsis (Riken BRC)Viridiplantae-brassicales-arabidopsisooooo
15NBRP-ChrysanthemumViridiplantae-asterids-chrysanthemumooo
16NBRP-Morning gloryViridiplantae-solanales-ipomoeeaeooLMoo
17NBRP-Lotus/Glycine (LegumeBase)Fabales-fabaceaeoooLMoo(miyakogusa.jp[11], Soybean Full-length cDNA database[12])
18NBRP-TomatoViridiplantae-solanales-lycopersicono(KafTom;http://www.pgb.kazusa.or.jp/kaftom/, MiBASE[13])
19NBRP-Algae14 phyla (eukaryota and bacteria)ooophotograph, phylogenetic tree
20NBRP-YeastFungi-ascomycotaooPASGD[14], geneDB[15]
21NBRP-Cellular slime moldMycetozoa-dictyostelliidaodictyBase[16]
22NBRP-Prokaryote E. coliBacteria-proteobacteriaooPAoPEC[17], EcoGene[18], EcoCyc[19], COG[20], NCBI[1], SwissProt[21], GTOP[22], KEGG[23], InterPro[24]
23NBRP-Prokaryote B. subtilisBacteria-firmicutes-bacilli-bacillaceaeoM
24NBRP-Pathogenic microbesBacteria and protozoaooo
25NBRP-General microbes (Riken BRC, JCM)Bacteriao
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