PerR-regulated genes identified by microarray analyses and confirmed by quantitative real-time PCR (qRT-PCR) for different GAS serotypes.
M type . | ORF no.a . | Growth phase . | Gene . | Proteinb . | Relative expressionc . | Referenced . | |
---|---|---|---|---|---|---|---|
. | . | . | . | . | Microarray . | qRT-PCR . | . |
Oxidative stress – virulence (putative) | |||||||
M3 | 0466 | Mid-exponential | adcA | Putative adhesin (zinc-binding) | −4.6 | −3.2 | Gryllos et al. (2008) |
M3 | 0815 | Mid-exponential | hylIII | Putative hemolysin III | +3.0 | −1.2 | Gryllos et al. (2008) |
M3 | 1093 | Mid-exponential | pmtA | Putative metal transport ATPase | −11.3 | −15.8 | Gryllos et al. (2008) |
M14 | 05800 | Mid-exponential | pmtA | Putative metal transport ATPase | n/a | −30.0 | Brenot, Weston and Caparon (2007) |
M3 | 1770 | Late exponential | ahpC | Putative alkyl hydroperoxidase | −1.7 | −1.9 | Gryllos et al. (2008) |
M14 | 08790 | Mid-exponential | ahpC | Putative alkyl hydroperoxidase | n/a | −1.3 | Brenot, King and Caparon (2005) |
M3 | 1095 | Late exponential | mf4 | Putative mitogenic factor/DNase | −2.2 | −2.1 | Gryllos et al. (2008) |
M1 | 1436 | Mid-exponential | mf3 | Secreted DNase virulence factor | n/a | +4.3 | Wen et al. (2011) |
M3 | 0298 | Late exponential | prtS | Interleukin 8 protease | −2.1 | −2.0 | Grifantini et al. (2011) |
M3 | 0482 | Late exponential | sagC | SLS-associated ORF | −2.1 | −1.6 | Grifantini et al. (2011) |
M14 | 06285 | Mid-exponential | mrgA | Peroxide resistance protein | n/a | −2.8 | Brenot, King and Caparon (2005) |
M14 | 08560 | Mid-exponential | lsp | Laminin-binding protein | n/a | −100 | Brenot, Weston and Caparon (2007) |
M1 T1 | 1415 | Mid-exponential | sda1 | DNase and virulence factor | n/a | +2.5 | Wang et al. (2013) |
Sugar metabolism/transport | |||||||
M3 | 1489 | Late exponential | lacR.1 | Putative lactose PTS repressor | +1.9 | +2.5 | Gryllos et al. (2008) |
M3 | 1484 | Mid-exponential | lacB.1 | Galactose 6-phosphate isomerase | −2.3 | +1.1 | Gryllos et al. (2008) |
M3 | 1658 | Late exponential | lacB.2 | Galactose 6-phosphate isomerase | +5.0 | +6.6 | Gryllos et al. (2008) |
M3 | 1658 | Late exponential | lacB.2 | Galactose-6-phosphate isomerase | −4.9 | −2.0 | Grifantini et al. (2011) |
M3 | 1654 | Late exponential | lacE | Putative PTS enzyme IIBC | +4.0 | +10.7 | Gryllos et al. (2008) |
M3 | 1659 | Late exponential | lacA2 | Galactose-6-phosphate isomerase | −2.4 | −2.5 | Grifantini et al. (2011) |
M3 | 1660 | Late exponential | lacR.2 | Putative lactose PTS repressor | +1.9 | +2.2 | Gryllos et al. (2008) |
M3 | 1487 | Late exponential | pts | Putative PTS enzyme IIB | +2.9 | +5.9 | Gryllos et al. (2008) |
Metal – ABC transport | |||||||
M3 | 0069 | Mid-exponential | adcR | Putative transcriptional repressor | −1.9 | −1.3 | Gryllos et al. (2008) |
M3 | 0069 | Mid-exponential | adcR | Putative transcriptional repressor | +1.6 | +2.3 | Grifantini et al. (2011) |
M3 | 0071 | Mid-exponential | adcB | Zinc/manganese ABC transporter | +2.0 | +1.7 | Grifantini et al. (2011) |
M3 | 0319 | Mid-exponential | mtsB | Iron ABC transporter | −1.9 | −1.0 | Grifantini et al. (2011) |
M3 | 1557 | Late exponential | siaD | Putative ABC transporter | −1.9 | −1.7 | Grifantini et al. (2011) |
M3 | 1560 | Late exponential | shp | Heme/ferrichrome-binding protein | −2.0 | −1.8 | Grifantini et al. (2011) |
M1 | 0453 | Mid-exponential | mtsA | Iron ABC transporter | n/a | −2.0 | Hanks et al. (2006) |
General biosynthesis/metabolism | |||||||
M3 | 0027 | Mid-exponential | purE | Phosphoribosylaminoimidazole carboxylase catalytic subunit | +2.2 | +1.2 | Gryllos et al. (2008) |
M3 | 1615 | Mid-exponential | rpsN.2 | 30S subunit ribosomal protein S14 | −3.3 | −2.5 | Gryllos et al. (2008) |
M14 | 07960 | Mid-exponential | rpsN.2 | 30S subunit ribosomal protein S14 | n/a | −4.0 | Brenot, Weston and Caparon (2007) |
M3 | 0302 | Late exponential | nrdI.2 | Putative ribonucleotide reductase | −2.7 | −1.5 | Gryllos et al. (2008) |
M3 | 0013 | Late exponential | n/a | Putative amino acid permease | −2.5 | −1.5 | Grifantini et al. (2011) |
M3 | 0217 | Late exponential | oppC | Oligopeptide permease | −2.0 | −1.9 | Grifantini et al. (2011) |
M3 | 1363 | Late exponential | cysM | Putative O-acetylserine lyase | +2.1 | 1.0 | Grifantini et al. (2011) |
M3 | 1794 | Late exponential | nrdD | Ribonucleoside triphosphate reductase | −2.9 | −2.5 | Grifantini et al. (2011) |
Hypothetical | |||||||
M3 | 1208 | Mid-exponential | n/a | Conserved hypothetical protein | +2.0 | +2.0 | Gryllos et al. (2008) |
M3 | 1724 | Late exponential | phtD | Hypothetical protein | −2.3 | −5.6 | Gryllos et al. (2008) |
M14 | 08555 | Mid-exponential | phtD | Hypothetical protein | n/a | −100 | Brenot, Weston and Caparon (2007) |
M14 | 05535 | Mid-exponential | phtY | Hypothetical protein | n/a | −30 | Brenot, Weston and Caparon (2007) |
Miscellaneous | |||||||
M3 | 0840 | Mid-exponential | n/a | Putative transcriptional repressor | +3.2 | +4.6 | Grifantini et al. (2011) |
M14 | 08775 | Mid-exponential | csp | Putative cold shock protein | n/a | +2.5 | Brenot, King and Caparon (2005) |
M type . | ORF no.a . | Growth phase . | Gene . | Proteinb . | Relative expressionc . | Referenced . | |
---|---|---|---|---|---|---|---|
. | . | . | . | . | Microarray . | qRT-PCR . | . |
Oxidative stress – virulence (putative) | |||||||
M3 | 0466 | Mid-exponential | adcA | Putative adhesin (zinc-binding) | −4.6 | −3.2 | Gryllos et al. (2008) |
M3 | 0815 | Mid-exponential | hylIII | Putative hemolysin III | +3.0 | −1.2 | Gryllos et al. (2008) |
M3 | 1093 | Mid-exponential | pmtA | Putative metal transport ATPase | −11.3 | −15.8 | Gryllos et al. (2008) |
M14 | 05800 | Mid-exponential | pmtA | Putative metal transport ATPase | n/a | −30.0 | Brenot, Weston and Caparon (2007) |
M3 | 1770 | Late exponential | ahpC | Putative alkyl hydroperoxidase | −1.7 | −1.9 | Gryllos et al. (2008) |
M14 | 08790 | Mid-exponential | ahpC | Putative alkyl hydroperoxidase | n/a | −1.3 | Brenot, King and Caparon (2005) |
M3 | 1095 | Late exponential | mf4 | Putative mitogenic factor/DNase | −2.2 | −2.1 | Gryllos et al. (2008) |
M1 | 1436 | Mid-exponential | mf3 | Secreted DNase virulence factor | n/a | +4.3 | Wen et al. (2011) |
M3 | 0298 | Late exponential | prtS | Interleukin 8 protease | −2.1 | −2.0 | Grifantini et al. (2011) |
M3 | 0482 | Late exponential | sagC | SLS-associated ORF | −2.1 | −1.6 | Grifantini et al. (2011) |
M14 | 06285 | Mid-exponential | mrgA | Peroxide resistance protein | n/a | −2.8 | Brenot, King and Caparon (2005) |
M14 | 08560 | Mid-exponential | lsp | Laminin-binding protein | n/a | −100 | Brenot, Weston and Caparon (2007) |
M1 T1 | 1415 | Mid-exponential | sda1 | DNase and virulence factor | n/a | +2.5 | Wang et al. (2013) |
Sugar metabolism/transport | |||||||
M3 | 1489 | Late exponential | lacR.1 | Putative lactose PTS repressor | +1.9 | +2.5 | Gryllos et al. (2008) |
M3 | 1484 | Mid-exponential | lacB.1 | Galactose 6-phosphate isomerase | −2.3 | +1.1 | Gryllos et al. (2008) |
M3 | 1658 | Late exponential | lacB.2 | Galactose 6-phosphate isomerase | +5.0 | +6.6 | Gryllos et al. (2008) |
M3 | 1658 | Late exponential | lacB.2 | Galactose-6-phosphate isomerase | −4.9 | −2.0 | Grifantini et al. (2011) |
M3 | 1654 | Late exponential | lacE | Putative PTS enzyme IIBC | +4.0 | +10.7 | Gryllos et al. (2008) |
M3 | 1659 | Late exponential | lacA2 | Galactose-6-phosphate isomerase | −2.4 | −2.5 | Grifantini et al. (2011) |
M3 | 1660 | Late exponential | lacR.2 | Putative lactose PTS repressor | +1.9 | +2.2 | Gryllos et al. (2008) |
M3 | 1487 | Late exponential | pts | Putative PTS enzyme IIB | +2.9 | +5.9 | Gryllos et al. (2008) |
Metal – ABC transport | |||||||
M3 | 0069 | Mid-exponential | adcR | Putative transcriptional repressor | −1.9 | −1.3 | Gryllos et al. (2008) |
M3 | 0069 | Mid-exponential | adcR | Putative transcriptional repressor | +1.6 | +2.3 | Grifantini et al. (2011) |
M3 | 0071 | Mid-exponential | adcB | Zinc/manganese ABC transporter | +2.0 | +1.7 | Grifantini et al. (2011) |
M3 | 0319 | Mid-exponential | mtsB | Iron ABC transporter | −1.9 | −1.0 | Grifantini et al. (2011) |
M3 | 1557 | Late exponential | siaD | Putative ABC transporter | −1.9 | −1.7 | Grifantini et al. (2011) |
M3 | 1560 | Late exponential | shp | Heme/ferrichrome-binding protein | −2.0 | −1.8 | Grifantini et al. (2011) |
M1 | 0453 | Mid-exponential | mtsA | Iron ABC transporter | n/a | −2.0 | Hanks et al. (2006) |
General biosynthesis/metabolism | |||||||
M3 | 0027 | Mid-exponential | purE | Phosphoribosylaminoimidazole carboxylase catalytic subunit | +2.2 | +1.2 | Gryllos et al. (2008) |
M3 | 1615 | Mid-exponential | rpsN.2 | 30S subunit ribosomal protein S14 | −3.3 | −2.5 | Gryllos et al. (2008) |
M14 | 07960 | Mid-exponential | rpsN.2 | 30S subunit ribosomal protein S14 | n/a | −4.0 | Brenot, Weston and Caparon (2007) |
M3 | 0302 | Late exponential | nrdI.2 | Putative ribonucleotide reductase | −2.7 | −1.5 | Gryllos et al. (2008) |
M3 | 0013 | Late exponential | n/a | Putative amino acid permease | −2.5 | −1.5 | Grifantini et al. (2011) |
M3 | 0217 | Late exponential | oppC | Oligopeptide permease | −2.0 | −1.9 | Grifantini et al. (2011) |
M3 | 1363 | Late exponential | cysM | Putative O-acetylserine lyase | +2.1 | 1.0 | Grifantini et al. (2011) |
M3 | 1794 | Late exponential | nrdD | Ribonucleoside triphosphate reductase | −2.9 | −2.5 | Grifantini et al. (2011) |
Hypothetical | |||||||
M3 | 1208 | Mid-exponential | n/a | Conserved hypothetical protein | +2.0 | +2.0 | Gryllos et al. (2008) |
M3 | 1724 | Late exponential | phtD | Hypothetical protein | −2.3 | −5.6 | Gryllos et al. (2008) |
M14 | 08555 | Mid-exponential | phtD | Hypothetical protein | n/a | −100 | Brenot, Weston and Caparon (2007) |
M14 | 05535 | Mid-exponential | phtY | Hypothetical protein | n/a | −30 | Brenot, Weston and Caparon (2007) |
Miscellaneous | |||||||
M3 | 0840 | Mid-exponential | n/a | Putative transcriptional repressor | +3.2 | +4.6 | Grifantini et al. (2011) |
M14 | 08775 | Mid-exponential | csp | Putative cold shock protein | n/a | +2.5 | Brenot, King and Caparon (2005) |
aOpen reading frame (ORF) number of published GAS genome sequence: M1 strain SF370 (Ferretti et al., 2001), M1T1 strain MGAS5005 (Sumby et al., 2005), M3 strain MGAS315 (Beres et al., 2002) and M14 strain HSC5 (Port, Paluscio and Caparon 2013).
bNCBI annotation.
cFold-change of expression in wild-type GAS compared to expression in the isogenic perR mutant.
dGryllos et al. (2008): Transcriptome comparisons performed between wild-type M3 GAS strain 003Sm and isogenic perR mutant strain 003SmperRΔ grown to mid-exponential phase (OD600nm = 0.25) or late-exponential phase (OD600nm = 0.6) phase.
Grifantini et al. (2011): Wild-type M3 GAS strain 003Sm and perR mutant 003SmperRΔ were grown to mid-exponential phase (OD600nm = 0.25) or late-exponential phase (OD600nm = 0.6) at which point they were challenged with H2O2 (final concentration 0.5 mM) for 15 min at 37°C or with water as a control.
Brenot, King and Caparon (2005): Total RNA extracted from mid-exponential phase (OD600nm = 0.3) cultures of wild-type serotype M14 GAS strain HSC5 and the isogenic perR mutant.
Brenot, Weston and Caparon (2007): RNA from HSC5 and the isogenic PerR-deficient mutant (HΔPer) was isolated from mid-exponential phase cultures (OD600nm = 0.3).
Wen et al. (2011): Transcriptome comparisons were performed between wild-type M1 strain AP-20 and isogenic perR mutant strain (SW-612) cultured to mid-log phase (OD600nm ∼ 0.5).
Wang et al. (2013): Wild-type serotype M1 GAS strain A-20 and isogenic perR mutant (SW-612) were grown for 3 h and treated with 0.5 mM of H2O2 for another 2 h prior to RNA extraction and real-time PCR analysis.
Hanks et al. (2006): Serotype M1 GAS strain MGAS5005 and the isogenic perR mutant were harvested at an OD600nm of 0.2, 0.4 or 0.7 and immediately processed to isolate total RNA.
n/a; not available.
PerR-regulated genes identified by microarray analyses and confirmed by quantitative real-time PCR (qRT-PCR) for different GAS serotypes.
M type . | ORF no.a . | Growth phase . | Gene . | Proteinb . | Relative expressionc . | Referenced . | |
---|---|---|---|---|---|---|---|
. | . | . | . | . | Microarray . | qRT-PCR . | . |
Oxidative stress – virulence (putative) | |||||||
M3 | 0466 | Mid-exponential | adcA | Putative adhesin (zinc-binding) | −4.6 | −3.2 | Gryllos et al. (2008) |
M3 | 0815 | Mid-exponential | hylIII | Putative hemolysin III | +3.0 | −1.2 | Gryllos et al. (2008) |
M3 | 1093 | Mid-exponential | pmtA | Putative metal transport ATPase | −11.3 | −15.8 | Gryllos et al. (2008) |
M14 | 05800 | Mid-exponential | pmtA | Putative metal transport ATPase | n/a | −30.0 | Brenot, Weston and Caparon (2007) |
M3 | 1770 | Late exponential | ahpC | Putative alkyl hydroperoxidase | −1.7 | −1.9 | Gryllos et al. (2008) |
M14 | 08790 | Mid-exponential | ahpC | Putative alkyl hydroperoxidase | n/a | −1.3 | Brenot, King and Caparon (2005) |
M3 | 1095 | Late exponential | mf4 | Putative mitogenic factor/DNase | −2.2 | −2.1 | Gryllos et al. (2008) |
M1 | 1436 | Mid-exponential | mf3 | Secreted DNase virulence factor | n/a | +4.3 | Wen et al. (2011) |
M3 | 0298 | Late exponential | prtS | Interleukin 8 protease | −2.1 | −2.0 | Grifantini et al. (2011) |
M3 | 0482 | Late exponential | sagC | SLS-associated ORF | −2.1 | −1.6 | Grifantini et al. (2011) |
M14 | 06285 | Mid-exponential | mrgA | Peroxide resistance protein | n/a | −2.8 | Brenot, King and Caparon (2005) |
M14 | 08560 | Mid-exponential | lsp | Laminin-binding protein | n/a | −100 | Brenot, Weston and Caparon (2007) |
M1 T1 | 1415 | Mid-exponential | sda1 | DNase and virulence factor | n/a | +2.5 | Wang et al. (2013) |
Sugar metabolism/transport | |||||||
M3 | 1489 | Late exponential | lacR.1 | Putative lactose PTS repressor | +1.9 | +2.5 | Gryllos et al. (2008) |
M3 | 1484 | Mid-exponential | lacB.1 | Galactose 6-phosphate isomerase | −2.3 | +1.1 | Gryllos et al. (2008) |
M3 | 1658 | Late exponential | lacB.2 | Galactose 6-phosphate isomerase | +5.0 | +6.6 | Gryllos et al. (2008) |
M3 | 1658 | Late exponential | lacB.2 | Galactose-6-phosphate isomerase | −4.9 | −2.0 | Grifantini et al. (2011) |
M3 | 1654 | Late exponential | lacE | Putative PTS enzyme IIBC | +4.0 | +10.7 | Gryllos et al. (2008) |
M3 | 1659 | Late exponential | lacA2 | Galactose-6-phosphate isomerase | −2.4 | −2.5 | Grifantini et al. (2011) |
M3 | 1660 | Late exponential | lacR.2 | Putative lactose PTS repressor | +1.9 | +2.2 | Gryllos et al. (2008) |
M3 | 1487 | Late exponential | pts | Putative PTS enzyme IIB | +2.9 | +5.9 | Gryllos et al. (2008) |
Metal – ABC transport | |||||||
M3 | 0069 | Mid-exponential | adcR | Putative transcriptional repressor | −1.9 | −1.3 | Gryllos et al. (2008) |
M3 | 0069 | Mid-exponential | adcR | Putative transcriptional repressor | +1.6 | +2.3 | Grifantini et al. (2011) |
M3 | 0071 | Mid-exponential | adcB | Zinc/manganese ABC transporter | +2.0 | +1.7 | Grifantini et al. (2011) |
M3 | 0319 | Mid-exponential | mtsB | Iron ABC transporter | −1.9 | −1.0 | Grifantini et al. (2011) |
M3 | 1557 | Late exponential | siaD | Putative ABC transporter | −1.9 | −1.7 | Grifantini et al. (2011) |
M3 | 1560 | Late exponential | shp | Heme/ferrichrome-binding protein | −2.0 | −1.8 | Grifantini et al. (2011) |
M1 | 0453 | Mid-exponential | mtsA | Iron ABC transporter | n/a | −2.0 | Hanks et al. (2006) |
General biosynthesis/metabolism | |||||||
M3 | 0027 | Mid-exponential | purE | Phosphoribosylaminoimidazole carboxylase catalytic subunit | +2.2 | +1.2 | Gryllos et al. (2008) |
M3 | 1615 | Mid-exponential | rpsN.2 | 30S subunit ribosomal protein S14 | −3.3 | −2.5 | Gryllos et al. (2008) |
M14 | 07960 | Mid-exponential | rpsN.2 | 30S subunit ribosomal protein S14 | n/a | −4.0 | Brenot, Weston and Caparon (2007) |
M3 | 0302 | Late exponential | nrdI.2 | Putative ribonucleotide reductase | −2.7 | −1.5 | Gryllos et al. (2008) |
M3 | 0013 | Late exponential | n/a | Putative amino acid permease | −2.5 | −1.5 | Grifantini et al. (2011) |
M3 | 0217 | Late exponential | oppC | Oligopeptide permease | −2.0 | −1.9 | Grifantini et al. (2011) |
M3 | 1363 | Late exponential | cysM | Putative O-acetylserine lyase | +2.1 | 1.0 | Grifantini et al. (2011) |
M3 | 1794 | Late exponential | nrdD | Ribonucleoside triphosphate reductase | −2.9 | −2.5 | Grifantini et al. (2011) |
Hypothetical | |||||||
M3 | 1208 | Mid-exponential | n/a | Conserved hypothetical protein | +2.0 | +2.0 | Gryllos et al. (2008) |
M3 | 1724 | Late exponential | phtD | Hypothetical protein | −2.3 | −5.6 | Gryllos et al. (2008) |
M14 | 08555 | Mid-exponential | phtD | Hypothetical protein | n/a | −100 | Brenot, Weston and Caparon (2007) |
M14 | 05535 | Mid-exponential | phtY | Hypothetical protein | n/a | −30 | Brenot, Weston and Caparon (2007) |
Miscellaneous | |||||||
M3 | 0840 | Mid-exponential | n/a | Putative transcriptional repressor | +3.2 | +4.6 | Grifantini et al. (2011) |
M14 | 08775 | Mid-exponential | csp | Putative cold shock protein | n/a | +2.5 | Brenot, King and Caparon (2005) |
M type . | ORF no.a . | Growth phase . | Gene . | Proteinb . | Relative expressionc . | Referenced . | |
---|---|---|---|---|---|---|---|
. | . | . | . | . | Microarray . | qRT-PCR . | . |
Oxidative stress – virulence (putative) | |||||||
M3 | 0466 | Mid-exponential | adcA | Putative adhesin (zinc-binding) | −4.6 | −3.2 | Gryllos et al. (2008) |
M3 | 0815 | Mid-exponential | hylIII | Putative hemolysin III | +3.0 | −1.2 | Gryllos et al. (2008) |
M3 | 1093 | Mid-exponential | pmtA | Putative metal transport ATPase | −11.3 | −15.8 | Gryllos et al. (2008) |
M14 | 05800 | Mid-exponential | pmtA | Putative metal transport ATPase | n/a | −30.0 | Brenot, Weston and Caparon (2007) |
M3 | 1770 | Late exponential | ahpC | Putative alkyl hydroperoxidase | −1.7 | −1.9 | Gryllos et al. (2008) |
M14 | 08790 | Mid-exponential | ahpC | Putative alkyl hydroperoxidase | n/a | −1.3 | Brenot, King and Caparon (2005) |
M3 | 1095 | Late exponential | mf4 | Putative mitogenic factor/DNase | −2.2 | −2.1 | Gryllos et al. (2008) |
M1 | 1436 | Mid-exponential | mf3 | Secreted DNase virulence factor | n/a | +4.3 | Wen et al. (2011) |
M3 | 0298 | Late exponential | prtS | Interleukin 8 protease | −2.1 | −2.0 | Grifantini et al. (2011) |
M3 | 0482 | Late exponential | sagC | SLS-associated ORF | −2.1 | −1.6 | Grifantini et al. (2011) |
M14 | 06285 | Mid-exponential | mrgA | Peroxide resistance protein | n/a | −2.8 | Brenot, King and Caparon (2005) |
M14 | 08560 | Mid-exponential | lsp | Laminin-binding protein | n/a | −100 | Brenot, Weston and Caparon (2007) |
M1 T1 | 1415 | Mid-exponential | sda1 | DNase and virulence factor | n/a | +2.5 | Wang et al. (2013) |
Sugar metabolism/transport | |||||||
M3 | 1489 | Late exponential | lacR.1 | Putative lactose PTS repressor | +1.9 | +2.5 | Gryllos et al. (2008) |
M3 | 1484 | Mid-exponential | lacB.1 | Galactose 6-phosphate isomerase | −2.3 | +1.1 | Gryllos et al. (2008) |
M3 | 1658 | Late exponential | lacB.2 | Galactose 6-phosphate isomerase | +5.0 | +6.6 | Gryllos et al. (2008) |
M3 | 1658 | Late exponential | lacB.2 | Galactose-6-phosphate isomerase | −4.9 | −2.0 | Grifantini et al. (2011) |
M3 | 1654 | Late exponential | lacE | Putative PTS enzyme IIBC | +4.0 | +10.7 | Gryllos et al. (2008) |
M3 | 1659 | Late exponential | lacA2 | Galactose-6-phosphate isomerase | −2.4 | −2.5 | Grifantini et al. (2011) |
M3 | 1660 | Late exponential | lacR.2 | Putative lactose PTS repressor | +1.9 | +2.2 | Gryllos et al. (2008) |
M3 | 1487 | Late exponential | pts | Putative PTS enzyme IIB | +2.9 | +5.9 | Gryllos et al. (2008) |
Metal – ABC transport | |||||||
M3 | 0069 | Mid-exponential | adcR | Putative transcriptional repressor | −1.9 | −1.3 | Gryllos et al. (2008) |
M3 | 0069 | Mid-exponential | adcR | Putative transcriptional repressor | +1.6 | +2.3 | Grifantini et al. (2011) |
M3 | 0071 | Mid-exponential | adcB | Zinc/manganese ABC transporter | +2.0 | +1.7 | Grifantini et al. (2011) |
M3 | 0319 | Mid-exponential | mtsB | Iron ABC transporter | −1.9 | −1.0 | Grifantini et al. (2011) |
M3 | 1557 | Late exponential | siaD | Putative ABC transporter | −1.9 | −1.7 | Grifantini et al. (2011) |
M3 | 1560 | Late exponential | shp | Heme/ferrichrome-binding protein | −2.0 | −1.8 | Grifantini et al. (2011) |
M1 | 0453 | Mid-exponential | mtsA | Iron ABC transporter | n/a | −2.0 | Hanks et al. (2006) |
General biosynthesis/metabolism | |||||||
M3 | 0027 | Mid-exponential | purE | Phosphoribosylaminoimidazole carboxylase catalytic subunit | +2.2 | +1.2 | Gryllos et al. (2008) |
M3 | 1615 | Mid-exponential | rpsN.2 | 30S subunit ribosomal protein S14 | −3.3 | −2.5 | Gryllos et al. (2008) |
M14 | 07960 | Mid-exponential | rpsN.2 | 30S subunit ribosomal protein S14 | n/a | −4.0 | Brenot, Weston and Caparon (2007) |
M3 | 0302 | Late exponential | nrdI.2 | Putative ribonucleotide reductase | −2.7 | −1.5 | Gryllos et al. (2008) |
M3 | 0013 | Late exponential | n/a | Putative amino acid permease | −2.5 | −1.5 | Grifantini et al. (2011) |
M3 | 0217 | Late exponential | oppC | Oligopeptide permease | −2.0 | −1.9 | Grifantini et al. (2011) |
M3 | 1363 | Late exponential | cysM | Putative O-acetylserine lyase | +2.1 | 1.0 | Grifantini et al. (2011) |
M3 | 1794 | Late exponential | nrdD | Ribonucleoside triphosphate reductase | −2.9 | −2.5 | Grifantini et al. (2011) |
Hypothetical | |||||||
M3 | 1208 | Mid-exponential | n/a | Conserved hypothetical protein | +2.0 | +2.0 | Gryllos et al. (2008) |
M3 | 1724 | Late exponential | phtD | Hypothetical protein | −2.3 | −5.6 | Gryllos et al. (2008) |
M14 | 08555 | Mid-exponential | phtD | Hypothetical protein | n/a | −100 | Brenot, Weston and Caparon (2007) |
M14 | 05535 | Mid-exponential | phtY | Hypothetical protein | n/a | −30 | Brenot, Weston and Caparon (2007) |
Miscellaneous | |||||||
M3 | 0840 | Mid-exponential | n/a | Putative transcriptional repressor | +3.2 | +4.6 | Grifantini et al. (2011) |
M14 | 08775 | Mid-exponential | csp | Putative cold shock protein | n/a | +2.5 | Brenot, King and Caparon (2005) |
aOpen reading frame (ORF) number of published GAS genome sequence: M1 strain SF370 (Ferretti et al., 2001), M1T1 strain MGAS5005 (Sumby et al., 2005), M3 strain MGAS315 (Beres et al., 2002) and M14 strain HSC5 (Port, Paluscio and Caparon 2013).
bNCBI annotation.
cFold-change of expression in wild-type GAS compared to expression in the isogenic perR mutant.
dGryllos et al. (2008): Transcriptome comparisons performed between wild-type M3 GAS strain 003Sm and isogenic perR mutant strain 003SmperRΔ grown to mid-exponential phase (OD600nm = 0.25) or late-exponential phase (OD600nm = 0.6) phase.
Grifantini et al. (2011): Wild-type M3 GAS strain 003Sm and perR mutant 003SmperRΔ were grown to mid-exponential phase (OD600nm = 0.25) or late-exponential phase (OD600nm = 0.6) at which point they were challenged with H2O2 (final concentration 0.5 mM) for 15 min at 37°C or with water as a control.
Brenot, King and Caparon (2005): Total RNA extracted from mid-exponential phase (OD600nm = 0.3) cultures of wild-type serotype M14 GAS strain HSC5 and the isogenic perR mutant.
Brenot, Weston and Caparon (2007): RNA from HSC5 and the isogenic PerR-deficient mutant (HΔPer) was isolated from mid-exponential phase cultures (OD600nm = 0.3).
Wen et al. (2011): Transcriptome comparisons were performed between wild-type M1 strain AP-20 and isogenic perR mutant strain (SW-612) cultured to mid-log phase (OD600nm ∼ 0.5).
Wang et al. (2013): Wild-type serotype M1 GAS strain A-20 and isogenic perR mutant (SW-612) were grown for 3 h and treated with 0.5 mM of H2O2 for another 2 h prior to RNA extraction and real-time PCR analysis.
Hanks et al. (2006): Serotype M1 GAS strain MGAS5005 and the isogenic perR mutant were harvested at an OD600nm of 0.2, 0.4 or 0.7 and immediately processed to isolate total RNA.
n/a; not available.
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