Table 2.

PerR-regulated genes identified by microarray analyses and confirmed by quantitative real-time PCR (qRT-PCR) for different GAS serotypes.

M typeORF no.aGrowth phaseGeneProteinbRelative expressioncReferenced
MicroarrayqRT-PCR
Oxidative stress – virulence (putative)
M30466Mid-exponentialadcAPutative adhesin (zinc-binding)−4.6−3.2Gryllos et al. (2008)
M30815Mid-exponentialhylIIIPutative hemolysin III+3.0−1.2Gryllos et al. (2008)
M31093Mid-exponentialpmtAPutative metal transport ATPase−11.3−15.8Gryllos et al. (2008)
M1405800Mid-exponentialpmtAPutative metal transport ATPasen/a−30.0Brenot, Weston and Caparon (2007)
M31770Late exponentialahpCPutative alkyl hydroperoxidase−1.7−1.9Gryllos et al. (2008)
M1408790Mid-exponentialahpCPutative alkyl hydroperoxidasen/a−1.3Brenot, King and Caparon (2005)
M31095Late exponentialmf4Putative mitogenic factor/DNase−2.2−2.1Gryllos et al. (2008)
M11436Mid-exponentialmf3Secreted DNase virulence factorn/a+4.3Wen et al. (2011)
M30298Late exponentialprtSInterleukin 8 protease−2.1−2.0Grifantini et al. (2011)
M30482Late exponentialsagCSLS-associated ORF−2.1−1.6Grifantini et al. (2011)
M1406285Mid-exponentialmrgAPeroxide resistance proteinn/a−2.8Brenot, King and Caparon (2005)
M1408560Mid-exponentiallspLaminin-binding proteinn/a−100Brenot, Weston and Caparon (2007)
M1 T11415Mid-exponentialsda1DNase and virulence factorn/a+2.5Wang et al. (2013)
Sugar metabolism/transport
M31489Late exponentiallacR.1Putative lactose PTS repressor+1.9+2.5Gryllos et al. (2008)
M31484Mid-exponentiallacB.1Galactose 6-phosphate isomerase−2.3+1.1Gryllos et al. (2008)
M31658Late exponentiallacB.2Galactose 6-phosphate isomerase+5.0+6.6Gryllos et al. (2008)
M31658Late exponentiallacB.2Galactose-6-phosphate isomerase−4.9−2.0Grifantini et al. (2011)
M31654Late exponentiallacEPutative PTS enzyme IIBC+4.0+10.7Gryllos et al. (2008)
M31659Late exponentiallacA2Galactose-6-phosphate isomerase−2.4−2.5Grifantini et al. (2011)
M31660Late exponentiallacR.2Putative lactose PTS repressor+1.9+2.2Gryllos et al. (2008)
M31487Late exponentialptsPutative PTS enzyme IIB+2.9+5.9Gryllos et al. (2008)
Metal – ABC transport
M30069Mid-exponentialadcRPutative transcriptional repressor−1.9−1.3Gryllos et al. (2008)
M30069Mid-exponentialadcRPutative transcriptional repressor+1.6+2.3Grifantini et al. (2011)
M30071Mid-exponentialadcBZinc/manganese ABC transporter+2.0+1.7Grifantini et al. (2011)
M30319Mid-exponentialmtsBIron ABC transporter−1.9−1.0Grifantini et al. (2011)
M31557Late exponentialsiaDPutative ABC transporter−1.9−1.7Grifantini et al. (2011)
M31560Late exponentialshpHeme/ferrichrome-binding protein−2.0−1.8Grifantini et al. (2011)
M10453Mid-exponentialmtsAIron ABC transportern/a−2.0Hanks et al. (2006)
General biosynthesis/metabolism
M30027Mid-exponentialpurEPhosphoribosylaminoimidazole carboxylase catalytic subunit+2.2+1.2Gryllos et al. (2008)
M31615Mid-exponentialrpsN.230S subunit ribosomal protein S14−3.3−2.5Gryllos et al. (2008)
M1407960Mid-exponentialrpsN.230S subunit ribosomal protein S14n/a−4.0Brenot, Weston and Caparon (2007)
M30302Late exponentialnrdI.2Putative ribonucleotide reductase−2.7−1.5Gryllos et al. (2008)
M30013Late exponentialn/aPutative amino acid permease−2.5−1.5Grifantini et al. (2011)
M30217Late exponentialoppCOligopeptide permease−2.0−1.9Grifantini et al. (2011)
M31363Late exponentialcysMPutative O-acetylserine lyase+2.11.0Grifantini et al. (2011)
M31794Late exponentialnrdDRibonucleoside triphosphate reductase−2.9−2.5Grifantini et al. (2011)
Hypothetical
M31208Mid-exponentialn/aConserved hypothetical protein+2.0+2.0Gryllos et al. (2008)
M31724Late exponentialphtDHypothetical protein−2.3−5.6Gryllos et al. (2008)
M1408555Mid-exponentialphtDHypothetical proteinn/a−100Brenot, Weston and Caparon (2007)
M1405535Mid-exponentialphtYHypothetical proteinn/a−30Brenot, Weston and Caparon (2007)
Miscellaneous
M30840Mid-exponentialn/aPutative transcriptional repressor+3.2+4.6Grifantini et al. (2011)
M1408775Mid-exponentialcspPutative cold shock proteinn/a+2.5Brenot, King and Caparon (2005)
M typeORF no.aGrowth phaseGeneProteinbRelative expressioncReferenced
MicroarrayqRT-PCR
Oxidative stress – virulence (putative)
M30466Mid-exponentialadcAPutative adhesin (zinc-binding)−4.6−3.2Gryllos et al. (2008)
M30815Mid-exponentialhylIIIPutative hemolysin III+3.0−1.2Gryllos et al. (2008)
M31093Mid-exponentialpmtAPutative metal transport ATPase−11.3−15.8Gryllos et al. (2008)
M1405800Mid-exponentialpmtAPutative metal transport ATPasen/a−30.0Brenot, Weston and Caparon (2007)
M31770Late exponentialahpCPutative alkyl hydroperoxidase−1.7−1.9Gryllos et al. (2008)
M1408790Mid-exponentialahpCPutative alkyl hydroperoxidasen/a−1.3Brenot, King and Caparon (2005)
M31095Late exponentialmf4Putative mitogenic factor/DNase−2.2−2.1Gryllos et al. (2008)
M11436Mid-exponentialmf3Secreted DNase virulence factorn/a+4.3Wen et al. (2011)
M30298Late exponentialprtSInterleukin 8 protease−2.1−2.0Grifantini et al. (2011)
M30482Late exponentialsagCSLS-associated ORF−2.1−1.6Grifantini et al. (2011)
M1406285Mid-exponentialmrgAPeroxide resistance proteinn/a−2.8Brenot, King and Caparon (2005)
M1408560Mid-exponentiallspLaminin-binding proteinn/a−100Brenot, Weston and Caparon (2007)
M1 T11415Mid-exponentialsda1DNase and virulence factorn/a+2.5Wang et al. (2013)
Sugar metabolism/transport
M31489Late exponentiallacR.1Putative lactose PTS repressor+1.9+2.5Gryllos et al. (2008)
M31484Mid-exponentiallacB.1Galactose 6-phosphate isomerase−2.3+1.1Gryllos et al. (2008)
M31658Late exponentiallacB.2Galactose 6-phosphate isomerase+5.0+6.6Gryllos et al. (2008)
M31658Late exponentiallacB.2Galactose-6-phosphate isomerase−4.9−2.0Grifantini et al. (2011)
M31654Late exponentiallacEPutative PTS enzyme IIBC+4.0+10.7Gryllos et al. (2008)
M31659Late exponentiallacA2Galactose-6-phosphate isomerase−2.4−2.5Grifantini et al. (2011)
M31660Late exponentiallacR.2Putative lactose PTS repressor+1.9+2.2Gryllos et al. (2008)
M31487Late exponentialptsPutative PTS enzyme IIB+2.9+5.9Gryllos et al. (2008)
Metal – ABC transport
M30069Mid-exponentialadcRPutative transcriptional repressor−1.9−1.3Gryllos et al. (2008)
M30069Mid-exponentialadcRPutative transcriptional repressor+1.6+2.3Grifantini et al. (2011)
M30071Mid-exponentialadcBZinc/manganese ABC transporter+2.0+1.7Grifantini et al. (2011)
M30319Mid-exponentialmtsBIron ABC transporter−1.9−1.0Grifantini et al. (2011)
M31557Late exponentialsiaDPutative ABC transporter−1.9−1.7Grifantini et al. (2011)
M31560Late exponentialshpHeme/ferrichrome-binding protein−2.0−1.8Grifantini et al. (2011)
M10453Mid-exponentialmtsAIron ABC transportern/a−2.0Hanks et al. (2006)
General biosynthesis/metabolism
M30027Mid-exponentialpurEPhosphoribosylaminoimidazole carboxylase catalytic subunit+2.2+1.2Gryllos et al. (2008)
M31615Mid-exponentialrpsN.230S subunit ribosomal protein S14−3.3−2.5Gryllos et al. (2008)
M1407960Mid-exponentialrpsN.230S subunit ribosomal protein S14n/a−4.0Brenot, Weston and Caparon (2007)
M30302Late exponentialnrdI.2Putative ribonucleotide reductase−2.7−1.5Gryllos et al. (2008)
M30013Late exponentialn/aPutative amino acid permease−2.5−1.5Grifantini et al. (2011)
M30217Late exponentialoppCOligopeptide permease−2.0−1.9Grifantini et al. (2011)
M31363Late exponentialcysMPutative O-acetylserine lyase+2.11.0Grifantini et al. (2011)
M31794Late exponentialnrdDRibonucleoside triphosphate reductase−2.9−2.5Grifantini et al. (2011)
Hypothetical
M31208Mid-exponentialn/aConserved hypothetical protein+2.0+2.0Gryllos et al. (2008)
M31724Late exponentialphtDHypothetical protein−2.3−5.6Gryllos et al. (2008)
M1408555Mid-exponentialphtDHypothetical proteinn/a−100Brenot, Weston and Caparon (2007)
M1405535Mid-exponentialphtYHypothetical proteinn/a−30Brenot, Weston and Caparon (2007)
Miscellaneous
M30840Mid-exponentialn/aPutative transcriptional repressor+3.2+4.6Grifantini et al. (2011)
M1408775Mid-exponentialcspPutative cold shock proteinn/a+2.5Brenot, King and Caparon (2005)

aOpen reading frame (ORF) number of published GAS genome sequence: M1 strain SF370 (Ferretti et al.2001), M1T1 strain MGAS5005 (Sumby et al.2005), M3 strain MGAS315 (Beres et al., 2002) and M14 strain HSC5 (Port, Paluscio and Caparon 2013).

bNCBI annotation.

cFold-change of expression in wild-type GAS compared to expression in the isogenic perR mutant.

dGryllos et al. (2008): Transcriptome comparisons performed between wild-type M3 GAS strain 003Sm and isogenic perR mutant strain 003SmperRΔ grown to mid-exponential phase (OD600nm = 0.25) or late-exponential phase (OD600nm = 0.6) phase.

Grifantini et al. (2011): Wild-type M3 GAS strain 003Sm and perR mutant 003SmperRΔ were grown to mid-exponential phase (OD600nm = 0.25) or late-exponential phase (OD600nm = 0.6) at which point they were challenged with H2O2 (final concentration 0.5 mM) for 15 min at 37°C or with water as a control.

Brenot, King and Caparon (2005): Total RNA extracted from mid-exponential phase (OD600nm = 0.3) cultures of wild-type serotype M14 GAS strain HSC5 and the isogenic perR mutant.

Brenot, Weston and Caparon (2007): RNA from HSC5 and the isogenic PerR-deficient mutant (HΔPer) was isolated from mid-exponential phase cultures (OD600nm = 0.3).

Wen et al. (2011): Transcriptome comparisons were performed between wild-type M1 strain AP-20 and isogenic perR mutant strain (SW-612) cultured to mid-log phase (OD600nm ∼ 0.5).

Wang et al. (2013): Wild-type serotype M1 GAS strain A-20 and isogenic perR mutant (SW-612) were grown for 3 h and treated with 0.5 mM of H2O2 for another 2 h prior to RNA extraction and real-time PCR analysis.

Hanks et al. (2006): Serotype M1 GAS strain MGAS5005 and the isogenic perR mutant were harvested at an OD600nm of 0.2, 0.4 or 0.7 and immediately processed to isolate total RNA.

n/a; not available.

Table 2.

PerR-regulated genes identified by microarray analyses and confirmed by quantitative real-time PCR (qRT-PCR) for different GAS serotypes.

M typeORF no.aGrowth phaseGeneProteinbRelative expressioncReferenced
MicroarrayqRT-PCR
Oxidative stress – virulence (putative)
M30466Mid-exponentialadcAPutative adhesin (zinc-binding)−4.6−3.2Gryllos et al. (2008)
M30815Mid-exponentialhylIIIPutative hemolysin III+3.0−1.2Gryllos et al. (2008)
M31093Mid-exponentialpmtAPutative metal transport ATPase−11.3−15.8Gryllos et al. (2008)
M1405800Mid-exponentialpmtAPutative metal transport ATPasen/a−30.0Brenot, Weston and Caparon (2007)
M31770Late exponentialahpCPutative alkyl hydroperoxidase−1.7−1.9Gryllos et al. (2008)
M1408790Mid-exponentialahpCPutative alkyl hydroperoxidasen/a−1.3Brenot, King and Caparon (2005)
M31095Late exponentialmf4Putative mitogenic factor/DNase−2.2−2.1Gryllos et al. (2008)
M11436Mid-exponentialmf3Secreted DNase virulence factorn/a+4.3Wen et al. (2011)
M30298Late exponentialprtSInterleukin 8 protease−2.1−2.0Grifantini et al. (2011)
M30482Late exponentialsagCSLS-associated ORF−2.1−1.6Grifantini et al. (2011)
M1406285Mid-exponentialmrgAPeroxide resistance proteinn/a−2.8Brenot, King and Caparon (2005)
M1408560Mid-exponentiallspLaminin-binding proteinn/a−100Brenot, Weston and Caparon (2007)
M1 T11415Mid-exponentialsda1DNase and virulence factorn/a+2.5Wang et al. (2013)
Sugar metabolism/transport
M31489Late exponentiallacR.1Putative lactose PTS repressor+1.9+2.5Gryllos et al. (2008)
M31484Mid-exponentiallacB.1Galactose 6-phosphate isomerase−2.3+1.1Gryllos et al. (2008)
M31658Late exponentiallacB.2Galactose 6-phosphate isomerase+5.0+6.6Gryllos et al. (2008)
M31658Late exponentiallacB.2Galactose-6-phosphate isomerase−4.9−2.0Grifantini et al. (2011)
M31654Late exponentiallacEPutative PTS enzyme IIBC+4.0+10.7Gryllos et al. (2008)
M31659Late exponentiallacA2Galactose-6-phosphate isomerase−2.4−2.5Grifantini et al. (2011)
M31660Late exponentiallacR.2Putative lactose PTS repressor+1.9+2.2Gryllos et al. (2008)
M31487Late exponentialptsPutative PTS enzyme IIB+2.9+5.9Gryllos et al. (2008)
Metal – ABC transport
M30069Mid-exponentialadcRPutative transcriptional repressor−1.9−1.3Gryllos et al. (2008)
M30069Mid-exponentialadcRPutative transcriptional repressor+1.6+2.3Grifantini et al. (2011)
M30071Mid-exponentialadcBZinc/manganese ABC transporter+2.0+1.7Grifantini et al. (2011)
M30319Mid-exponentialmtsBIron ABC transporter−1.9−1.0Grifantini et al. (2011)
M31557Late exponentialsiaDPutative ABC transporter−1.9−1.7Grifantini et al. (2011)
M31560Late exponentialshpHeme/ferrichrome-binding protein−2.0−1.8Grifantini et al. (2011)
M10453Mid-exponentialmtsAIron ABC transportern/a−2.0Hanks et al. (2006)
General biosynthesis/metabolism
M30027Mid-exponentialpurEPhosphoribosylaminoimidazole carboxylase catalytic subunit+2.2+1.2Gryllos et al. (2008)
M31615Mid-exponentialrpsN.230S subunit ribosomal protein S14−3.3−2.5Gryllos et al. (2008)
M1407960Mid-exponentialrpsN.230S subunit ribosomal protein S14n/a−4.0Brenot, Weston and Caparon (2007)
M30302Late exponentialnrdI.2Putative ribonucleotide reductase−2.7−1.5Gryllos et al. (2008)
M30013Late exponentialn/aPutative amino acid permease−2.5−1.5Grifantini et al. (2011)
M30217Late exponentialoppCOligopeptide permease−2.0−1.9Grifantini et al. (2011)
M31363Late exponentialcysMPutative O-acetylserine lyase+2.11.0Grifantini et al. (2011)
M31794Late exponentialnrdDRibonucleoside triphosphate reductase−2.9−2.5Grifantini et al. (2011)
Hypothetical
M31208Mid-exponentialn/aConserved hypothetical protein+2.0+2.0Gryllos et al. (2008)
M31724Late exponentialphtDHypothetical protein−2.3−5.6Gryllos et al. (2008)
M1408555Mid-exponentialphtDHypothetical proteinn/a−100Brenot, Weston and Caparon (2007)
M1405535Mid-exponentialphtYHypothetical proteinn/a−30Brenot, Weston and Caparon (2007)
Miscellaneous
M30840Mid-exponentialn/aPutative transcriptional repressor+3.2+4.6Grifantini et al. (2011)
M1408775Mid-exponentialcspPutative cold shock proteinn/a+2.5Brenot, King and Caparon (2005)
M typeORF no.aGrowth phaseGeneProteinbRelative expressioncReferenced
MicroarrayqRT-PCR
Oxidative stress – virulence (putative)
M30466Mid-exponentialadcAPutative adhesin (zinc-binding)−4.6−3.2Gryllos et al. (2008)
M30815Mid-exponentialhylIIIPutative hemolysin III+3.0−1.2Gryllos et al. (2008)
M31093Mid-exponentialpmtAPutative metal transport ATPase−11.3−15.8Gryllos et al. (2008)
M1405800Mid-exponentialpmtAPutative metal transport ATPasen/a−30.0Brenot, Weston and Caparon (2007)
M31770Late exponentialahpCPutative alkyl hydroperoxidase−1.7−1.9Gryllos et al. (2008)
M1408790Mid-exponentialahpCPutative alkyl hydroperoxidasen/a−1.3Brenot, King and Caparon (2005)
M31095Late exponentialmf4Putative mitogenic factor/DNase−2.2−2.1Gryllos et al. (2008)
M11436Mid-exponentialmf3Secreted DNase virulence factorn/a+4.3Wen et al. (2011)
M30298Late exponentialprtSInterleukin 8 protease−2.1−2.0Grifantini et al. (2011)
M30482Late exponentialsagCSLS-associated ORF−2.1−1.6Grifantini et al. (2011)
M1406285Mid-exponentialmrgAPeroxide resistance proteinn/a−2.8Brenot, King and Caparon (2005)
M1408560Mid-exponentiallspLaminin-binding proteinn/a−100Brenot, Weston and Caparon (2007)
M1 T11415Mid-exponentialsda1DNase and virulence factorn/a+2.5Wang et al. (2013)
Sugar metabolism/transport
M31489Late exponentiallacR.1Putative lactose PTS repressor+1.9+2.5Gryllos et al. (2008)
M31484Mid-exponentiallacB.1Galactose 6-phosphate isomerase−2.3+1.1Gryllos et al. (2008)
M31658Late exponentiallacB.2Galactose 6-phosphate isomerase+5.0+6.6Gryllos et al. (2008)
M31658Late exponentiallacB.2Galactose-6-phosphate isomerase−4.9−2.0Grifantini et al. (2011)
M31654Late exponentiallacEPutative PTS enzyme IIBC+4.0+10.7Gryllos et al. (2008)
M31659Late exponentiallacA2Galactose-6-phosphate isomerase−2.4−2.5Grifantini et al. (2011)
M31660Late exponentiallacR.2Putative lactose PTS repressor+1.9+2.2Gryllos et al. (2008)
M31487Late exponentialptsPutative PTS enzyme IIB+2.9+5.9Gryllos et al. (2008)
Metal – ABC transport
M30069Mid-exponentialadcRPutative transcriptional repressor−1.9−1.3Gryllos et al. (2008)
M30069Mid-exponentialadcRPutative transcriptional repressor+1.6+2.3Grifantini et al. (2011)
M30071Mid-exponentialadcBZinc/manganese ABC transporter+2.0+1.7Grifantini et al. (2011)
M30319Mid-exponentialmtsBIron ABC transporter−1.9−1.0Grifantini et al. (2011)
M31557Late exponentialsiaDPutative ABC transporter−1.9−1.7Grifantini et al. (2011)
M31560Late exponentialshpHeme/ferrichrome-binding protein−2.0−1.8Grifantini et al. (2011)
M10453Mid-exponentialmtsAIron ABC transportern/a−2.0Hanks et al. (2006)
General biosynthesis/metabolism
M30027Mid-exponentialpurEPhosphoribosylaminoimidazole carboxylase catalytic subunit+2.2+1.2Gryllos et al. (2008)
M31615Mid-exponentialrpsN.230S subunit ribosomal protein S14−3.3−2.5Gryllos et al. (2008)
M1407960Mid-exponentialrpsN.230S subunit ribosomal protein S14n/a−4.0Brenot, Weston and Caparon (2007)
M30302Late exponentialnrdI.2Putative ribonucleotide reductase−2.7−1.5Gryllos et al. (2008)
M30013Late exponentialn/aPutative amino acid permease−2.5−1.5Grifantini et al. (2011)
M30217Late exponentialoppCOligopeptide permease−2.0−1.9Grifantini et al. (2011)
M31363Late exponentialcysMPutative O-acetylserine lyase+2.11.0Grifantini et al. (2011)
M31794Late exponentialnrdDRibonucleoside triphosphate reductase−2.9−2.5Grifantini et al. (2011)
Hypothetical
M31208Mid-exponentialn/aConserved hypothetical protein+2.0+2.0Gryllos et al. (2008)
M31724Late exponentialphtDHypothetical protein−2.3−5.6Gryllos et al. (2008)
M1408555Mid-exponentialphtDHypothetical proteinn/a−100Brenot, Weston and Caparon (2007)
M1405535Mid-exponentialphtYHypothetical proteinn/a−30Brenot, Weston and Caparon (2007)
Miscellaneous
M30840Mid-exponentialn/aPutative transcriptional repressor+3.2+4.6Grifantini et al. (2011)
M1408775Mid-exponentialcspPutative cold shock proteinn/a+2.5Brenot, King and Caparon (2005)

aOpen reading frame (ORF) number of published GAS genome sequence: M1 strain SF370 (Ferretti et al.2001), M1T1 strain MGAS5005 (Sumby et al.2005), M3 strain MGAS315 (Beres et al., 2002) and M14 strain HSC5 (Port, Paluscio and Caparon 2013).

bNCBI annotation.

cFold-change of expression in wild-type GAS compared to expression in the isogenic perR mutant.

dGryllos et al. (2008): Transcriptome comparisons performed between wild-type M3 GAS strain 003Sm and isogenic perR mutant strain 003SmperRΔ grown to mid-exponential phase (OD600nm = 0.25) or late-exponential phase (OD600nm = 0.6) phase.

Grifantini et al. (2011): Wild-type M3 GAS strain 003Sm and perR mutant 003SmperRΔ were grown to mid-exponential phase (OD600nm = 0.25) or late-exponential phase (OD600nm = 0.6) at which point they were challenged with H2O2 (final concentration 0.5 mM) for 15 min at 37°C or with water as a control.

Brenot, King and Caparon (2005): Total RNA extracted from mid-exponential phase (OD600nm = 0.3) cultures of wild-type serotype M14 GAS strain HSC5 and the isogenic perR mutant.

Brenot, Weston and Caparon (2007): RNA from HSC5 and the isogenic PerR-deficient mutant (HΔPer) was isolated from mid-exponential phase cultures (OD600nm = 0.3).

Wen et al. (2011): Transcriptome comparisons were performed between wild-type M1 strain AP-20 and isogenic perR mutant strain (SW-612) cultured to mid-log phase (OD600nm ∼ 0.5).

Wang et al. (2013): Wild-type serotype M1 GAS strain A-20 and isogenic perR mutant (SW-612) were grown for 3 h and treated with 0.5 mM of H2O2 for another 2 h prior to RNA extraction and real-time PCR analysis.

Hanks et al. (2006): Serotype M1 GAS strain MGAS5005 and the isogenic perR mutant were harvested at an OD600nm of 0.2, 0.4 or 0.7 and immediately processed to isolate total RNA.

n/a; not available.

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