| Trait . | QTL . | Chr . | Protein and function . | Population sizea (no. of plants) . | Candidate regionb (kb) . | FNPc . | Reference . |
|---|---|---|---|---|---|---|---|
| Heading date | Hd1 | 6 | Zn-finger domain and CCT motif | 1505 | 12 | Premature stop codon | Yano et al.7 |
| Heading date | Hd3a | 6 | FT-like protein | 2207 | 20 | Not determined | Kojima et al.8 |
| Heading date | Hd6 | 3 | Casein kinase 2alpha | 2807 | 26 | Premature stop codon | Takahashi et al.9 |
| Heading date | Ehd1 | 10 | B-type response regulator | 2500 | 16 | Amino acid substitution | Doi et al.10 |
| Heading date | Ghd7 | 7 | CCT motif | 1882 | 2284 | 38.3 kb deletion | Xue et al.11 |
| Submergence tolerance | Sub1A | 9 | Putative ethylene response factor | 4022 | 182 | Gene deletion | Xu et al.101 |
| Seed number | Gn1a | 1 | Cytokinin oxidase/dehydrogenase | 13 000 | 6.3 | Not determined | Ashikari et al.5 |
| UVB resistance | qUVR10 | 10 | CPD photolyase | 1850 | 27 | Amino acid substitution | Ueda et al.102 |
| Salt tolerance | SKC1 | 1 | HKT-type transporter | 2973 | 7.4 | Amino acid substitution | Ren et al.103 |
| Seed shattering | qSH1 | 1 | BEL-type homeodomain protein | 10 388 | 0.61 | Single-nucleotide substitution in regulatory region | Konishi et al.15 |
| Seed shattering | Sh4 | 4 | Myb3 DNA binding domain and NLS | 12 000 | 1.7 | Amino acid substitution? | Li et al.104 |
| Growth habit | PGOG1 | 7 | Zn-finger domain | 3051 | 14 | Amino acid substitution | Tan et al.,16 Jin et al.17 |
| Seed length | GS3 | 3 | BEBP-like domain, TNFR/NGFR family cysteine-rich domain, YWFC module | 1384 | 7.9 | Premature stop codon | Fan et al.105 |
| Seed width | GW2 | 7 | RING-type protein with E3 ubiqutin ligase activity | 6013 | 8 | Premature stop codon | Song et al.18 |
| Seed witdth | qSW5 | 5 | Unknown | 4501 | 2.2 | 1212 bp deletion | Shomura et al.19 |
| Low temperature germinablity | qLTG3-1 | 3 | Unknown, GRP and LTP domains | 3200 | 4.8 | 71 bp deletion | Fujino et al.71 |
| Regeneration ability | PSR1 | 1 | Ferredoxin-nitrate reductase | 3800 | 50.8 | Not determined | Nishimura et al.106 |
| Trait . | QTL . | Chr . | Protein and function . | Population sizea (no. of plants) . | Candidate regionb (kb) . | FNPc . | Reference . |
|---|---|---|---|---|---|---|---|
| Heading date | Hd1 | 6 | Zn-finger domain and CCT motif | 1505 | 12 | Premature stop codon | Yano et al.7 |
| Heading date | Hd3a | 6 | FT-like protein | 2207 | 20 | Not determined | Kojima et al.8 |
| Heading date | Hd6 | 3 | Casein kinase 2alpha | 2807 | 26 | Premature stop codon | Takahashi et al.9 |
| Heading date | Ehd1 | 10 | B-type response regulator | 2500 | 16 | Amino acid substitution | Doi et al.10 |
| Heading date | Ghd7 | 7 | CCT motif | 1882 | 2284 | 38.3 kb deletion | Xue et al.11 |
| Submergence tolerance | Sub1A | 9 | Putative ethylene response factor | 4022 | 182 | Gene deletion | Xu et al.101 |
| Seed number | Gn1a | 1 | Cytokinin oxidase/dehydrogenase | 13 000 | 6.3 | Not determined | Ashikari et al.5 |
| UVB resistance | qUVR10 | 10 | CPD photolyase | 1850 | 27 | Amino acid substitution | Ueda et al.102 |
| Salt tolerance | SKC1 | 1 | HKT-type transporter | 2973 | 7.4 | Amino acid substitution | Ren et al.103 |
| Seed shattering | qSH1 | 1 | BEL-type homeodomain protein | 10 388 | 0.61 | Single-nucleotide substitution in regulatory region | Konishi et al.15 |
| Seed shattering | Sh4 | 4 | Myb3 DNA binding domain and NLS | 12 000 | 1.7 | Amino acid substitution? | Li et al.104 |
| Growth habit | PGOG1 | 7 | Zn-finger domain | 3051 | 14 | Amino acid substitution | Tan et al.,16 Jin et al.17 |
| Seed length | GS3 | 3 | BEBP-like domain, TNFR/NGFR family cysteine-rich domain, YWFC module | 1384 | 7.9 | Premature stop codon | Fan et al.105 |
| Seed width | GW2 | 7 | RING-type protein with E3 ubiqutin ligase activity | 6013 | 8 | Premature stop codon | Song et al.18 |
| Seed witdth | qSW5 | 5 | Unknown | 4501 | 2.2 | 1212 bp deletion | Shomura et al.19 |
| Low temperature germinablity | qLTG3-1 | 3 | Unknown, GRP and LTP domains | 3200 | 4.8 | 71 bp deletion | Fujino et al.71 |
| Regeneration ability | PSR1 | 1 | Ferredoxin-nitrate reductase | 3800 | 50.8 | Not determined | Nishimura et al.106 |
aNo. of plants used in large-scale linkage mapping.
bPhysical distance of candidate genomic region defined by mapping.
cFunctional nucleotide polymorphism causing alleleic difference between parental lines.
| Trait . | QTL . | Chr . | Protein and function . | Population sizea (no. of plants) . | Candidate regionb (kb) . | FNPc . | Reference . |
|---|---|---|---|---|---|---|---|
| Heading date | Hd1 | 6 | Zn-finger domain and CCT motif | 1505 | 12 | Premature stop codon | Yano et al.7 |
| Heading date | Hd3a | 6 | FT-like protein | 2207 | 20 | Not determined | Kojima et al.8 |
| Heading date | Hd6 | 3 | Casein kinase 2alpha | 2807 | 26 | Premature stop codon | Takahashi et al.9 |
| Heading date | Ehd1 | 10 | B-type response regulator | 2500 | 16 | Amino acid substitution | Doi et al.10 |
| Heading date | Ghd7 | 7 | CCT motif | 1882 | 2284 | 38.3 kb deletion | Xue et al.11 |
| Submergence tolerance | Sub1A | 9 | Putative ethylene response factor | 4022 | 182 | Gene deletion | Xu et al.101 |
| Seed number | Gn1a | 1 | Cytokinin oxidase/dehydrogenase | 13 000 | 6.3 | Not determined | Ashikari et al.5 |
| UVB resistance | qUVR10 | 10 | CPD photolyase | 1850 | 27 | Amino acid substitution | Ueda et al.102 |
| Salt tolerance | SKC1 | 1 | HKT-type transporter | 2973 | 7.4 | Amino acid substitution | Ren et al.103 |
| Seed shattering | qSH1 | 1 | BEL-type homeodomain protein | 10 388 | 0.61 | Single-nucleotide substitution in regulatory region | Konishi et al.15 |
| Seed shattering | Sh4 | 4 | Myb3 DNA binding domain and NLS | 12 000 | 1.7 | Amino acid substitution? | Li et al.104 |
| Growth habit | PGOG1 | 7 | Zn-finger domain | 3051 | 14 | Amino acid substitution | Tan et al.,16 Jin et al.17 |
| Seed length | GS3 | 3 | BEBP-like domain, TNFR/NGFR family cysteine-rich domain, YWFC module | 1384 | 7.9 | Premature stop codon | Fan et al.105 |
| Seed width | GW2 | 7 | RING-type protein with E3 ubiqutin ligase activity | 6013 | 8 | Premature stop codon | Song et al.18 |
| Seed witdth | qSW5 | 5 | Unknown | 4501 | 2.2 | 1212 bp deletion | Shomura et al.19 |
| Low temperature germinablity | qLTG3-1 | 3 | Unknown, GRP and LTP domains | 3200 | 4.8 | 71 bp deletion | Fujino et al.71 |
| Regeneration ability | PSR1 | 1 | Ferredoxin-nitrate reductase | 3800 | 50.8 | Not determined | Nishimura et al.106 |
| Trait . | QTL . | Chr . | Protein and function . | Population sizea (no. of plants) . | Candidate regionb (kb) . | FNPc . | Reference . |
|---|---|---|---|---|---|---|---|
| Heading date | Hd1 | 6 | Zn-finger domain and CCT motif | 1505 | 12 | Premature stop codon | Yano et al.7 |
| Heading date | Hd3a | 6 | FT-like protein | 2207 | 20 | Not determined | Kojima et al.8 |
| Heading date | Hd6 | 3 | Casein kinase 2alpha | 2807 | 26 | Premature stop codon | Takahashi et al.9 |
| Heading date | Ehd1 | 10 | B-type response regulator | 2500 | 16 | Amino acid substitution | Doi et al.10 |
| Heading date | Ghd7 | 7 | CCT motif | 1882 | 2284 | 38.3 kb deletion | Xue et al.11 |
| Submergence tolerance | Sub1A | 9 | Putative ethylene response factor | 4022 | 182 | Gene deletion | Xu et al.101 |
| Seed number | Gn1a | 1 | Cytokinin oxidase/dehydrogenase | 13 000 | 6.3 | Not determined | Ashikari et al.5 |
| UVB resistance | qUVR10 | 10 | CPD photolyase | 1850 | 27 | Amino acid substitution | Ueda et al.102 |
| Salt tolerance | SKC1 | 1 | HKT-type transporter | 2973 | 7.4 | Amino acid substitution | Ren et al.103 |
| Seed shattering | qSH1 | 1 | BEL-type homeodomain protein | 10 388 | 0.61 | Single-nucleotide substitution in regulatory region | Konishi et al.15 |
| Seed shattering | Sh4 | 4 | Myb3 DNA binding domain and NLS | 12 000 | 1.7 | Amino acid substitution? | Li et al.104 |
| Growth habit | PGOG1 | 7 | Zn-finger domain | 3051 | 14 | Amino acid substitution | Tan et al.,16 Jin et al.17 |
| Seed length | GS3 | 3 | BEBP-like domain, TNFR/NGFR family cysteine-rich domain, YWFC module | 1384 | 7.9 | Premature stop codon | Fan et al.105 |
| Seed width | GW2 | 7 | RING-type protein with E3 ubiqutin ligase activity | 6013 | 8 | Premature stop codon | Song et al.18 |
| Seed witdth | qSW5 | 5 | Unknown | 4501 | 2.2 | 1212 bp deletion | Shomura et al.19 |
| Low temperature germinablity | qLTG3-1 | 3 | Unknown, GRP and LTP domains | 3200 | 4.8 | 71 bp deletion | Fujino et al.71 |
| Regeneration ability | PSR1 | 1 | Ferredoxin-nitrate reductase | 3800 | 50.8 | Not determined | Nishimura et al.106 |
aNo. of plants used in large-scale linkage mapping.
bPhysical distance of candidate genomic region defined by mapping.
cFunctional nucleotide polymorphism causing alleleic difference between parental lines.
This PDF is available to Subscribers Only
View Article Abstract & Purchase OptionsFor full access to this pdf, sign in to an existing account, or purchase an annual subscription.
