Table of coefficients for Model 1 Poisson GLMM, fitted on nasopharyngeal samples only with the number of iSNVs as the response variable. Significant effects (P < .05) are highlighted in pink. See Model S1 (Supplementary Table 4) for the full model including lymph node tissue samples.
| Predictors (Fixed effects) . | Estimate . | Rate ratio . | P-value . |
|---|---|---|---|
| Species (Reference: human) | |||
| Cat | NA | NA | > .05 |
| Dog | NA | NA | > .05 |
| Mink | NA | NA | > .05 |
| Deer | 0.9964 | 2.7085 | .0355 |
| Type of infection (Reference: Natural infection) | |||
| Lab infected | NA | NA | > .05 |
| Breadth of coverage | −1.9331 | 0.1447 | 1.6170E-05 |
| Depth of coverage | NA | NA | > .05 |
| Assay type | NA | NA | > .05 |
| Predictors (Fixed effects) . | Estimate . | Rate ratio . | P-value . |
|---|---|---|---|
| Species (Reference: human) | |||
| Cat | NA | NA | > .05 |
| Dog | NA | NA | > .05 |
| Mink | NA | NA | > .05 |
| Deer | 0.9964 | 2.7085 | .0355 |
| Type of infection (Reference: Natural infection) | |||
| Lab infected | NA | NA | > .05 |
| Breadth of coverage | −1.9331 | 0.1447 | 1.6170E-05 |
| Depth of coverage | NA | NA | > .05 |
| Assay type | NA | NA | > .05 |
Table of coefficients for Model 1 Poisson GLMM, fitted on nasopharyngeal samples only with the number of iSNVs as the response variable. Significant effects (P < .05) are highlighted in pink. See Model S1 (Supplementary Table 4) for the full model including lymph node tissue samples.
| Predictors (Fixed effects) . | Estimate . | Rate ratio . | P-value . |
|---|---|---|---|
| Species (Reference: human) | |||
| Cat | NA | NA | > .05 |
| Dog | NA | NA | > .05 |
| Mink | NA | NA | > .05 |
| Deer | 0.9964 | 2.7085 | .0355 |
| Type of infection (Reference: Natural infection) | |||
| Lab infected | NA | NA | > .05 |
| Breadth of coverage | −1.9331 | 0.1447 | 1.6170E-05 |
| Depth of coverage | NA | NA | > .05 |
| Assay type | NA | NA | > .05 |
| Predictors (Fixed effects) . | Estimate . | Rate ratio . | P-value . |
|---|---|---|---|
| Species (Reference: human) | |||
| Cat | NA | NA | > .05 |
| Dog | NA | NA | > .05 |
| Mink | NA | NA | > .05 |
| Deer | 0.9964 | 2.7085 | .0355 |
| Type of infection (Reference: Natural infection) | |||
| Lab infected | NA | NA | > .05 |
| Breadth of coverage | −1.9331 | 0.1447 | 1.6170E-05 |
| Depth of coverage | NA | NA | > .05 |
| Assay type | NA | NA | > .05 |
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