Performance comparison according to MAE in degrees on RNA-TorsionBERT test sets
Model . | |$\boldsymbol{\alpha }$| . | |$\boldsymbol{\beta }$| . | |$\boldsymbol{\gamma }$| . | |$\boldsymbol{\delta }$| . | |$\boldsymbol{\epsilon }$| . | |$\boldsymbol{\zeta }$| . | |$\boldsymbol{\chi }$| . | |$\boldsymbol{\eta }$| . | |$\boldsymbol{\theta }$| . | Mean . |
---|---|---|---|---|---|---|---|---|---|---|
DeepRNA-Twist | 34.7 | 16.8 | 25.5 | 12.1 | 13.4 | 23.4 | 12.6 | 17.2 | 22.3 | 19.78 |
RNA-TorsionBERT|$^{*}$| [10] | 37.3 | 19.6 | 29.4 | 13.6 | 16.6 | 26.6 | 14.7 | 20.1 | 25.4 | 22.6 |
SPOT-RNA-ID|$^{*}$| [9] | 50.7 | 30.1 | 35.8 | 28.3 | 21.9 | 29.8 | 20.9 | 25.0 | 27.5 | 30.0 |
lsRNA1|$^{*}$| [22] | 53.1 | 26.2 | 39.2 | 14.6 | 25.9 | 38.4 | 19.0 | 27.6 | 31.7 | 30.6 |
AlphaFold|$^{*}$| 3 [23] | 51.2 | 26.5 | 38.0 | 17.0 | 21.3 | 38.3 | 20.5 | 30.2 | 36.3 | 31.1 |
RNAJP|$^{*}$| [24] | 56.8 | 31.6 | 41.9 | 18.6 | 27.7 | 42.1 | 21.1 | 29.8 | 33.3 | 33.7 |
Vfold-Pipeline|$^{*}$| [25] | 55.4 | 28.1 | 38.8 | 20.1 | 32.0 | 43.1 | 25.0 | 34.2 | 41.5 | 35.4 |
RNAComposer|$^{*}$| [26] | 58.9 | 31.5 | 48.2 | 17.9 | 27.1 | 40.0 | 24.8 | 32.8 | 38.6 | 35.5 |
MC-Sym|$^{*}$| [27] | 72.2 | 31.2 | 61.5 | 31.8 | 25.6 | 49.4 | 29.6 | 41.2 | 44.6 | 43.0 |
3dRNA|$^{*}$| [28] | 65.7 | 40.0 | 53.6 | 33.7 | 40.3 | 52.7 | 27.2 | 40.2 | 45.6 | 44.3 |
trRosettaRNA|$^{*}$| [29] | 67.6 | 36.8 | 67.0 | 26.4 | 32.9 | 54.3 | 58.3 | 38.2 | 48.3 | 47.8 |
Rhofold|$^{*}$| [30] | 94.3 | 66.0 | 76.2 | 60.6 | 52.8 | 72.6 | 32.4 | 42.0 | 46.6 | 60.4 |
Model . | |$\boldsymbol{\alpha }$| . | |$\boldsymbol{\beta }$| . | |$\boldsymbol{\gamma }$| . | |$\boldsymbol{\delta }$| . | |$\boldsymbol{\epsilon }$| . | |$\boldsymbol{\zeta }$| . | |$\boldsymbol{\chi }$| . | |$\boldsymbol{\eta }$| . | |$\boldsymbol{\theta }$| . | Mean . |
---|---|---|---|---|---|---|---|---|---|---|
DeepRNA-Twist | 34.7 | 16.8 | 25.5 | 12.1 | 13.4 | 23.4 | 12.6 | 17.2 | 22.3 | 19.78 |
RNA-TorsionBERT|$^{*}$| [10] | 37.3 | 19.6 | 29.4 | 13.6 | 16.6 | 26.6 | 14.7 | 20.1 | 25.4 | 22.6 |
SPOT-RNA-ID|$^{*}$| [9] | 50.7 | 30.1 | 35.8 | 28.3 | 21.9 | 29.8 | 20.9 | 25.0 | 27.5 | 30.0 |
lsRNA1|$^{*}$| [22] | 53.1 | 26.2 | 39.2 | 14.6 | 25.9 | 38.4 | 19.0 | 27.6 | 31.7 | 30.6 |
AlphaFold|$^{*}$| 3 [23] | 51.2 | 26.5 | 38.0 | 17.0 | 21.3 | 38.3 | 20.5 | 30.2 | 36.3 | 31.1 |
RNAJP|$^{*}$| [24] | 56.8 | 31.6 | 41.9 | 18.6 | 27.7 | 42.1 | 21.1 | 29.8 | 33.3 | 33.7 |
Vfold-Pipeline|$^{*}$| [25] | 55.4 | 28.1 | 38.8 | 20.1 | 32.0 | 43.1 | 25.0 | 34.2 | 41.5 | 35.4 |
RNAComposer|$^{*}$| [26] | 58.9 | 31.5 | 48.2 | 17.9 | 27.1 | 40.0 | 24.8 | 32.8 | 38.6 | 35.5 |
MC-Sym|$^{*}$| [27] | 72.2 | 31.2 | 61.5 | 31.8 | 25.6 | 49.4 | 29.6 | 41.2 | 44.6 | 43.0 |
3dRNA|$^{*}$| [28] | 65.7 | 40.0 | 53.6 | 33.7 | 40.3 | 52.7 | 27.2 | 40.2 | 45.6 | 44.3 |
trRosettaRNA|$^{*}$| [29] | 67.6 | 36.8 | 67.0 | 26.4 | 32.9 | 54.3 | 58.3 | 38.2 | 48.3 | 47.8 |
Rhofold|$^{*}$| [30] | 94.3 | 66.0 | 76.2 | 60.6 | 52.8 | 72.6 | 32.4 | 42.0 | 46.6 | 60.4 |
*Reported from the preprint version of [10], available at https://www.biorxiv.org/content/10.1101/2024.06.06.597803v1
Performance comparison according to MAE in degrees on RNA-TorsionBERT test sets
Model . | |$\boldsymbol{\alpha }$| . | |$\boldsymbol{\beta }$| . | |$\boldsymbol{\gamma }$| . | |$\boldsymbol{\delta }$| . | |$\boldsymbol{\epsilon }$| . | |$\boldsymbol{\zeta }$| . | |$\boldsymbol{\chi }$| . | |$\boldsymbol{\eta }$| . | |$\boldsymbol{\theta }$| . | Mean . |
---|---|---|---|---|---|---|---|---|---|---|
DeepRNA-Twist | 34.7 | 16.8 | 25.5 | 12.1 | 13.4 | 23.4 | 12.6 | 17.2 | 22.3 | 19.78 |
RNA-TorsionBERT|$^{*}$| [10] | 37.3 | 19.6 | 29.4 | 13.6 | 16.6 | 26.6 | 14.7 | 20.1 | 25.4 | 22.6 |
SPOT-RNA-ID|$^{*}$| [9] | 50.7 | 30.1 | 35.8 | 28.3 | 21.9 | 29.8 | 20.9 | 25.0 | 27.5 | 30.0 |
lsRNA1|$^{*}$| [22] | 53.1 | 26.2 | 39.2 | 14.6 | 25.9 | 38.4 | 19.0 | 27.6 | 31.7 | 30.6 |
AlphaFold|$^{*}$| 3 [23] | 51.2 | 26.5 | 38.0 | 17.0 | 21.3 | 38.3 | 20.5 | 30.2 | 36.3 | 31.1 |
RNAJP|$^{*}$| [24] | 56.8 | 31.6 | 41.9 | 18.6 | 27.7 | 42.1 | 21.1 | 29.8 | 33.3 | 33.7 |
Vfold-Pipeline|$^{*}$| [25] | 55.4 | 28.1 | 38.8 | 20.1 | 32.0 | 43.1 | 25.0 | 34.2 | 41.5 | 35.4 |
RNAComposer|$^{*}$| [26] | 58.9 | 31.5 | 48.2 | 17.9 | 27.1 | 40.0 | 24.8 | 32.8 | 38.6 | 35.5 |
MC-Sym|$^{*}$| [27] | 72.2 | 31.2 | 61.5 | 31.8 | 25.6 | 49.4 | 29.6 | 41.2 | 44.6 | 43.0 |
3dRNA|$^{*}$| [28] | 65.7 | 40.0 | 53.6 | 33.7 | 40.3 | 52.7 | 27.2 | 40.2 | 45.6 | 44.3 |
trRosettaRNA|$^{*}$| [29] | 67.6 | 36.8 | 67.0 | 26.4 | 32.9 | 54.3 | 58.3 | 38.2 | 48.3 | 47.8 |
Rhofold|$^{*}$| [30] | 94.3 | 66.0 | 76.2 | 60.6 | 52.8 | 72.6 | 32.4 | 42.0 | 46.6 | 60.4 |
Model . | |$\boldsymbol{\alpha }$| . | |$\boldsymbol{\beta }$| . | |$\boldsymbol{\gamma }$| . | |$\boldsymbol{\delta }$| . | |$\boldsymbol{\epsilon }$| . | |$\boldsymbol{\zeta }$| . | |$\boldsymbol{\chi }$| . | |$\boldsymbol{\eta }$| . | |$\boldsymbol{\theta }$| . | Mean . |
---|---|---|---|---|---|---|---|---|---|---|
DeepRNA-Twist | 34.7 | 16.8 | 25.5 | 12.1 | 13.4 | 23.4 | 12.6 | 17.2 | 22.3 | 19.78 |
RNA-TorsionBERT|$^{*}$| [10] | 37.3 | 19.6 | 29.4 | 13.6 | 16.6 | 26.6 | 14.7 | 20.1 | 25.4 | 22.6 |
SPOT-RNA-ID|$^{*}$| [9] | 50.7 | 30.1 | 35.8 | 28.3 | 21.9 | 29.8 | 20.9 | 25.0 | 27.5 | 30.0 |
lsRNA1|$^{*}$| [22] | 53.1 | 26.2 | 39.2 | 14.6 | 25.9 | 38.4 | 19.0 | 27.6 | 31.7 | 30.6 |
AlphaFold|$^{*}$| 3 [23] | 51.2 | 26.5 | 38.0 | 17.0 | 21.3 | 38.3 | 20.5 | 30.2 | 36.3 | 31.1 |
RNAJP|$^{*}$| [24] | 56.8 | 31.6 | 41.9 | 18.6 | 27.7 | 42.1 | 21.1 | 29.8 | 33.3 | 33.7 |
Vfold-Pipeline|$^{*}$| [25] | 55.4 | 28.1 | 38.8 | 20.1 | 32.0 | 43.1 | 25.0 | 34.2 | 41.5 | 35.4 |
RNAComposer|$^{*}$| [26] | 58.9 | 31.5 | 48.2 | 17.9 | 27.1 | 40.0 | 24.8 | 32.8 | 38.6 | 35.5 |
MC-Sym|$^{*}$| [27] | 72.2 | 31.2 | 61.5 | 31.8 | 25.6 | 49.4 | 29.6 | 41.2 | 44.6 | 43.0 |
3dRNA|$^{*}$| [28] | 65.7 | 40.0 | 53.6 | 33.7 | 40.3 | 52.7 | 27.2 | 40.2 | 45.6 | 44.3 |
trRosettaRNA|$^{*}$| [29] | 67.6 | 36.8 | 67.0 | 26.4 | 32.9 | 54.3 | 58.3 | 38.2 | 48.3 | 47.8 |
Rhofold|$^{*}$| [30] | 94.3 | 66.0 | 76.2 | 60.6 | 52.8 | 72.6 | 32.4 | 42.0 | 46.6 | 60.4 |
*Reported from the preprint version of [10], available at https://www.biorxiv.org/content/10.1101/2024.06.06.597803v1
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