Table 1 Open in new tab Performance... | Oxford Academic

Table 1

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Performance comparison of different machine learning methods on the human and mouse datasets

Species	Model	AUC	ACC	AUPR	F1	Rec	Pre
Human	LightGBM	0.850	0.776	0.854	0.774	0.765	0.783
	XGBoost	0.842	0.769	0.846	0.767	0.761	0.774
	RF	0.829	0.763	0.832	0.759	0.746	0.772
	ExtraTree	0.825	0.758	0.828	0.753	0.738	0.769
	GBDT	0.839	0.770	0.843	0.766	0.752	0.781
	SVM	0.836	0.776	0.826	0.773	0.764	0.783
Mouse	LightGBM	0.845	0.770	0.862	0.753	0.700	0.814
	XGBoost	0.830	0.765	0.851	0.754	0.719	0.791
	RF	0.820	0.748	0.834	0.726	0.667	0.796
	ExtraTree	0.817	0.734	0.832	0.705	0.636	0.791
	GBDT	0.832	0.757	0.848	0.737	0.679	0.805
	SVM	0.831	0.773	0.839	0.754	0.697	0.822

Species	Model	AUC	ACC	AUPR	F1	Rec	Pre
Human	LightGBM	0.850	0.776	0.854	0.774	0.765	0.783
	XGBoost	0.842	0.769	0.846	0.767	0.761	0.774
	RF	0.829	0.763	0.832	0.759	0.746	0.772
	ExtraTree	0.825	0.758	0.828	0.753	0.738	0.769
	GBDT	0.839	0.770	0.843	0.766	0.752	0.781
	SVM	0.836	0.776	0.826	0.773	0.764	0.783
Mouse	LightGBM	0.845	0.770	0.862	0.753	0.700	0.814
	XGBoost	0.830	0.765	0.851	0.754	0.719	0.791
	RF	0.820	0.748	0.834	0.726	0.667	0.796
	ExtraTree	0.817	0.734	0.832	0.705	0.636	0.791
	GBDT	0.832	0.757	0.848	0.737	0.679	0.805
	SVM	0.831	0.773	0.839	0.754	0.697	0.822

Note: The top 4 accuracies for each species are shown in bold.

Table 1

Open in new tab

Performance comparison of different machine learning methods on the human and mouse datasets

Species	Model	AUC	ACC	AUPR	F1	Rec	Pre
Human	LightGBM	0.850	0.776	0.854	0.774	0.765	0.783
	XGBoost	0.842	0.769	0.846	0.767	0.761	0.774
	RF	0.829	0.763	0.832	0.759	0.746	0.772
	ExtraTree	0.825	0.758	0.828	0.753	0.738	0.769
	GBDT	0.839	0.770	0.843	0.766	0.752	0.781
	SVM	0.836	0.776	0.826	0.773	0.764	0.783
Mouse	LightGBM	0.845	0.770	0.862	0.753	0.700	0.814
	XGBoost	0.830	0.765	0.851	0.754	0.719	0.791
	RF	0.820	0.748	0.834	0.726	0.667	0.796
	ExtraTree	0.817	0.734	0.832	0.705	0.636	0.791
	GBDT	0.832	0.757	0.848	0.737	0.679	0.805
	SVM	0.831	0.773	0.839	0.754	0.697	0.822

Species	Model	AUC	ACC	AUPR	F1	Rec	Pre
Human	LightGBM	0.850	0.776	0.854	0.774	0.765	0.783
	XGBoost	0.842	0.769	0.846	0.767	0.761	0.774
	RF	0.829	0.763	0.832	0.759	0.746	0.772
	ExtraTree	0.825	0.758	0.828	0.753	0.738	0.769
	GBDT	0.839	0.770	0.843	0.766	0.752	0.781
	SVM	0.836	0.776	0.826	0.773	0.764	0.783
Mouse	LightGBM	0.845	0.770	0.862	0.753	0.700	0.814
	XGBoost	0.830	0.765	0.851	0.754	0.719	0.791
	RF	0.820	0.748	0.834	0.726	0.667	0.796
	ExtraTree	0.817	0.734	0.832	0.705	0.636	0.791
	GBDT	0.832	0.757	0.848	0.737	0.679	0.805
	SVM	0.831	0.773	0.839	0.754	0.697	0.822

Note: The top 4 accuracies for each species are shown in bold.