Table 1.
Open in new tab
URLs and other resources associated with the CDD project
URLDescription
https://www.ncbi.nlm.nih.gov/Structure/cdd/wrpsb.cgiCD-Search interface utilizing the RPS-BLAST algorithm and the model database, and to the CDART database of pre-computed domain annotation
https://www.ncbi.nlm.nih.gov/Structure/bwrpsb/bwrpsb.cgiBATCH CD-Search interface utilizing the RPS-BLAST algorithm and the model database, and to the CDART database of pre-computed domain annotation. Up to 4,000 protein queries may be submitted per request
https://www.ncbi.nlm.nih.gov/cddEntrez interface to CDD
https://www.ncbi.nlm.nih.gov/Structure/cdd/cdd.shtmlCDD project home page
https://www.ncbi.nlm.nih.gov/Structure/lexington/lexington.cgiCDART domain architecture viewer
ftp://ftp.ncbi.nih.gov/pub/mmdb/cddCDD FTP site, see README file for content
https://www.ncbi.nlm.nih.gov/Structure/cdtree/cdtree.shtmlDomain hierarchy editor/viewer and protein structure/alignment viewer
ftp://ftp.ncbi.nlm.nih.gov/toolbox; executables can be obtained from: https://www.ncbi.nlm.nih.gov/BLAST/download.shtmlRPS-BLAST stand-alone tool for searching databases of profile models, part of the NCBI toolkit distribution
https://www.ncbi.nlm.nih.gov/sparcleEntrez interface to SPARCLE (Subfamily Protein Architecture Labeling Engine)
URLDescription
https://www.ncbi.nlm.nih.gov/Structure/cdd/wrpsb.cgiCD-Search interface utilizing the RPS-BLAST algorithm and the model database, and to the CDART database of pre-computed domain annotation
https://www.ncbi.nlm.nih.gov/Structure/bwrpsb/bwrpsb.cgiBATCH CD-Search interface utilizing the RPS-BLAST algorithm and the model database, and to the CDART database of pre-computed domain annotation. Up to 4,000 protein queries may be submitted per request
https://www.ncbi.nlm.nih.gov/cddEntrez interface to CDD
https://www.ncbi.nlm.nih.gov/Structure/cdd/cdd.shtmlCDD project home page
https://www.ncbi.nlm.nih.gov/Structure/lexington/lexington.cgiCDART domain architecture viewer
ftp://ftp.ncbi.nih.gov/pub/mmdb/cddCDD FTP site, see README file for content
https://www.ncbi.nlm.nih.gov/Structure/cdtree/cdtree.shtmlDomain hierarchy editor/viewer and protein structure/alignment viewer
ftp://ftp.ncbi.nlm.nih.gov/toolbox; executables can be obtained from: https://www.ncbi.nlm.nih.gov/BLAST/download.shtmlRPS-BLAST stand-alone tool for searching databases of profile models, part of the NCBI toolkit distribution
https://www.ncbi.nlm.nih.gov/sparcleEntrez interface to SPARCLE (Subfamily Protein Architecture Labeling Engine)
Table 1.
Open in new tab
URLs and other resources associated with the CDD project
URLDescription
https://www.ncbi.nlm.nih.gov/Structure/cdd/wrpsb.cgiCD-Search interface utilizing the RPS-BLAST algorithm and the model database, and to the CDART database of pre-computed domain annotation
https://www.ncbi.nlm.nih.gov/Structure/bwrpsb/bwrpsb.cgiBATCH CD-Search interface utilizing the RPS-BLAST algorithm and the model database, and to the CDART database of pre-computed domain annotation. Up to 4,000 protein queries may be submitted per request
https://www.ncbi.nlm.nih.gov/cddEntrez interface to CDD
https://www.ncbi.nlm.nih.gov/Structure/cdd/cdd.shtmlCDD project home page
https://www.ncbi.nlm.nih.gov/Structure/lexington/lexington.cgiCDART domain architecture viewer
ftp://ftp.ncbi.nih.gov/pub/mmdb/cddCDD FTP site, see README file for content
https://www.ncbi.nlm.nih.gov/Structure/cdtree/cdtree.shtmlDomain hierarchy editor/viewer and protein structure/alignment viewer
ftp://ftp.ncbi.nlm.nih.gov/toolbox; executables can be obtained from: https://www.ncbi.nlm.nih.gov/BLAST/download.shtmlRPS-BLAST stand-alone tool for searching databases of profile models, part of the NCBI toolkit distribution
https://www.ncbi.nlm.nih.gov/sparcleEntrez interface to SPARCLE (Subfamily Protein Architecture Labeling Engine)
URLDescription
https://www.ncbi.nlm.nih.gov/Structure/cdd/wrpsb.cgiCD-Search interface utilizing the RPS-BLAST algorithm and the model database, and to the CDART database of pre-computed domain annotation
https://www.ncbi.nlm.nih.gov/Structure/bwrpsb/bwrpsb.cgiBATCH CD-Search interface utilizing the RPS-BLAST algorithm and the model database, and to the CDART database of pre-computed domain annotation. Up to 4,000 protein queries may be submitted per request
https://www.ncbi.nlm.nih.gov/cddEntrez interface to CDD
https://www.ncbi.nlm.nih.gov/Structure/cdd/cdd.shtmlCDD project home page
https://www.ncbi.nlm.nih.gov/Structure/lexington/lexington.cgiCDART domain architecture viewer
ftp://ftp.ncbi.nih.gov/pub/mmdb/cddCDD FTP site, see README file for content
https://www.ncbi.nlm.nih.gov/Structure/cdtree/cdtree.shtmlDomain hierarchy editor/viewer and protein structure/alignment viewer
ftp://ftp.ncbi.nlm.nih.gov/toolbox; executables can be obtained from: https://www.ncbi.nlm.nih.gov/BLAST/download.shtmlRPS-BLAST stand-alone tool for searching databases of profile models, part of the NCBI toolkit distribution
https://www.ncbi.nlm.nih.gov/sparcleEntrez interface to SPARCLE (Subfamily Protein Architecture Labeling Engine)
Close
This Feature Is Available To Subscribers Only

Sign In or Create an Account

Close

This PDF is available to Subscribers Only

View Article Abstract & Purchase Options

For full access to this pdf, sign in to an existing account, or purchase an annual subscription.

Close