Table 1.
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Genome Completeness (Based on BUSCO Results) Determined on Illumina, Oxford Nanopore Technologies, and Hybrid Method on ESKAPE Pathogens

SpeciesSequencerNo.C (>90%)aC (%)b
Enterococcus faeciumIllumina9191100.0
ONT912123.1
Hybrid9191100.0
Staphylococcus aureusIllumina201201100.0
ONT20117084.6
Hybrid201201100.0
Klebsiella pneumoniaeIllumina53751595.9
ONT537163.0
Hybrid53750193.3
Acinetobacter baumanniiIllumina25725699.6
ONT2578934.6
Hybrid257257100.0
Pseudomonas aeruginosaIllumina15916999.4
ONT1598654.1
Hybrid15916899.4
Enterobacter cloacaeIllumina14013596.4
ONT140139.3
Hybrid14013294.3
SpeciesSequencerNo.C (>90%)aC (%)b
Enterococcus faeciumIllumina9191100.0
ONT912123.1
Hybrid9191100.0
Staphylococcus aureusIllumina201201100.0
ONT20117084.6
Hybrid201201100.0
Klebsiella pneumoniaeIllumina53751595.9
ONT537163.0
Hybrid53750193.3
Acinetobacter baumanniiIllumina25725699.6
ONT2578934.6
Hybrid257257100.0
Pseudomonas aeruginosaIllumina15916999.4
ONT1598654.1
Hybrid15916899.4
Enterobacter cloacaeIllumina14013596.4
ONT140139.3
Hybrid14013294.3

Abbreviation: BUSCO, benchmarking universal single-copy orthologs; ONT, Oxford Nanopore Technologies.

aC (>90%) corresponds to the number of sequences surpassing the 90% threshold of coverage as indicated by the completeness metric from BUSCO.

bC (%) indicates the percentage of the total number of sequences that surpassed that 90% threshold.

Table 1.
Open in new tab

Genome Completeness (Based on BUSCO Results) Determined on Illumina, Oxford Nanopore Technologies, and Hybrid Method on ESKAPE Pathogens

SpeciesSequencerNo.C (>90%)aC (%)b
Enterococcus faeciumIllumina9191100.0
ONT912123.1
Hybrid9191100.0
Staphylococcus aureusIllumina201201100.0
ONT20117084.6
Hybrid201201100.0
Klebsiella pneumoniaeIllumina53751595.9
ONT537163.0
Hybrid53750193.3
Acinetobacter baumanniiIllumina25725699.6
ONT2578934.6
Hybrid257257100.0
Pseudomonas aeruginosaIllumina15916999.4
ONT1598654.1
Hybrid15916899.4
Enterobacter cloacaeIllumina14013596.4
ONT140139.3
Hybrid14013294.3
SpeciesSequencerNo.C (>90%)aC (%)b
Enterococcus faeciumIllumina9191100.0
ONT912123.1
Hybrid9191100.0
Staphylococcus aureusIllumina201201100.0
ONT20117084.6
Hybrid201201100.0
Klebsiella pneumoniaeIllumina53751595.9
ONT537163.0
Hybrid53750193.3
Acinetobacter baumanniiIllumina25725699.6
ONT2578934.6
Hybrid257257100.0
Pseudomonas aeruginosaIllumina15916999.4
ONT1598654.1
Hybrid15916899.4
Enterobacter cloacaeIllumina14013596.4
ONT140139.3
Hybrid14013294.3

Abbreviation: BUSCO, benchmarking universal single-copy orthologs; ONT, Oxford Nanopore Technologies.

aC (>90%) corresponds to the number of sequences surpassing the 90% threshold of coverage as indicated by the completeness metric from BUSCO.

bC (%) indicates the percentage of the total number of sequences that surpassed that 90% threshold.

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