MAGs identified from Amoebophrya-infected K. veneficum culture with a minimum of 98% 16S rRNA gene BLASTn identity
| MAG BLAST ID (GenBank accession no.) . | Coverageb . | Flye ID (%)c . | Canu ID (%)c . | Flye length . | Canu length . | Flye # contigs . | Canu # contigs . | Typical genome size (Mb)d . | GTDB taxonomy . |
|---|---|---|---|---|---|---|---|---|---|
| E. aurantius strain C5* (CP180349) | 354 | 98.9 | 98.9 | 3,328,698 | 3,359,381 | 1 | 1 | ∼3.4 | (Pseudomonadota) E. aurantius |
| Marivita sp. CB1101* (CP180351) | 80 | 99.6 | 99.6 | 4,656,275 | 4,526,901 | 2 | 1 | 3.6 to 4.9 | (Pseudomonadota) Marivita sp030148515 |
| Imperialibacter sp. Rs* (CP180355) | 42 | 99.2 | 99.2 | 6,856,966 | 6,856,909 | 1 | 1 | 4.8 to 6.8 | (Bacteroidota) Imperialibacter |
| Limnobacter thiooxidans CS-K2 (PRJNA1103200) | 16 | 99.3 | 99.3 | 3,118,024 | 2,941,441 | 6 | 23 | ∼3.5 | (Pseudomonadota) Limnobacter sp902506325 |
| Minwuia thermotolerans SY3-13* (CP180352) | 58 | 97.8 | 97.8 | 4,635,690 | 4,611,058 | 1 | 1 | 4.6 to 4.9 | (Pseudomonadota) Minwuia |
| Nioella ostreopsis Z7-4 (JBLLNQ000000000) | 59 | 99.8 | 99.8 | 4,923,006 | 4,850,388 | 10 | 5 | ∼4.6 | (Pseudomonadota) N. ostreopsis |
| Roseicyclus marinus Dej080120_10* (CP180348) | 56 | 99.9 | 99.9 | 3,365,735 | 3,365,935 | 1 | 1 | ∼3.6 | (Pseudomonadota) Roseicyclus |
| Seohaeicola sp. SP36* (CP180350) | 40 | 99.7 | 99.7 | 4,282,476 | 4,159,599 | 5 | 1 | ∼4.5 | (Pseudomonadota) EhC02 sp0016508895 |
| Thalassospira australica NP 3b2 (JBLLNT000000000) | 23 | 99.7 | 99.5 | 5,225,359 | 4,831,494 | 12 | 26 | ∼4.3 | (Pseudomonadota) Thalassospira |
| Thalassobaculum salexigens A11D-306* (CP180353-4) | 17 | 97.5 | 99.1 | 4,788,243 | 4,768,590 | 2 | 5 | 4.9 to 5.1 | (Pseudomonadota) JANSYS01 |
| Polymorphobacter multimanifer 262-7 (CP180346) | 28 | 97.8 | 97.8 | 2,817,605 | 2,819,673 | 1 | 1 | 3.8 to 3.9 | (Pseudomonadota) Sandarakinorhabdus |
| Pikeienuella piscinae RR4-56 (PRJNA1103200) | 14 | 98.1 | 98.1 | 4,804,495 | 3,776,009 | 6 | 29 | 4.4 to 5.0 | (Pseudomonadota) Pikeienuella sp030424705 |
| Yoonia vestfoldensis SMR4r (CP180347)*a | 6 | 99.4 | NA | 3,172,507 | NA | 1 | NA | 3.1 to 4.0 | (Pseudomonadota) Yoonia sp018402175 |
| MAG BLAST ID (GenBank accession no.) . | Coverageb . | Flye ID (%)c . | Canu ID (%)c . | Flye length . | Canu length . | Flye # contigs . | Canu # contigs . | Typical genome size (Mb)d . | GTDB taxonomy . |
|---|---|---|---|---|---|---|---|---|---|
| E. aurantius strain C5* (CP180349) | 354 | 98.9 | 98.9 | 3,328,698 | 3,359,381 | 1 | 1 | ∼3.4 | (Pseudomonadota) E. aurantius |
| Marivita sp. CB1101* (CP180351) | 80 | 99.6 | 99.6 | 4,656,275 | 4,526,901 | 2 | 1 | 3.6 to 4.9 | (Pseudomonadota) Marivita sp030148515 |
| Imperialibacter sp. Rs* (CP180355) | 42 | 99.2 | 99.2 | 6,856,966 | 6,856,909 | 1 | 1 | 4.8 to 6.8 | (Bacteroidota) Imperialibacter |
| Limnobacter thiooxidans CS-K2 (PRJNA1103200) | 16 | 99.3 | 99.3 | 3,118,024 | 2,941,441 | 6 | 23 | ∼3.5 | (Pseudomonadota) Limnobacter sp902506325 |
| Minwuia thermotolerans SY3-13* (CP180352) | 58 | 97.8 | 97.8 | 4,635,690 | 4,611,058 | 1 | 1 | 4.6 to 4.9 | (Pseudomonadota) Minwuia |
| Nioella ostreopsis Z7-4 (JBLLNQ000000000) | 59 | 99.8 | 99.8 | 4,923,006 | 4,850,388 | 10 | 5 | ∼4.6 | (Pseudomonadota) N. ostreopsis |
| Roseicyclus marinus Dej080120_10* (CP180348) | 56 | 99.9 | 99.9 | 3,365,735 | 3,365,935 | 1 | 1 | ∼3.6 | (Pseudomonadota) Roseicyclus |
| Seohaeicola sp. SP36* (CP180350) | 40 | 99.7 | 99.7 | 4,282,476 | 4,159,599 | 5 | 1 | ∼4.5 | (Pseudomonadota) EhC02 sp0016508895 |
| Thalassospira australica NP 3b2 (JBLLNT000000000) | 23 | 99.7 | 99.5 | 5,225,359 | 4,831,494 | 12 | 26 | ∼4.3 | (Pseudomonadota) Thalassospira |
| Thalassobaculum salexigens A11D-306* (CP180353-4) | 17 | 97.5 | 99.1 | 4,788,243 | 4,768,590 | 2 | 5 | 4.9 to 5.1 | (Pseudomonadota) JANSYS01 |
| Polymorphobacter multimanifer 262-7 (CP180346) | 28 | 97.8 | 97.8 | 2,817,605 | 2,819,673 | 1 | 1 | 3.8 to 3.9 | (Pseudomonadota) Sandarakinorhabdus |
| Pikeienuella piscinae RR4-56 (PRJNA1103200) | 14 | 98.1 | 98.1 | 4,804,495 | 3,776,009 | 6 | 29 | 4.4 to 5.0 | (Pseudomonadota) Pikeienuella sp030424705 |
| Yoonia vestfoldensis SMR4r (CP180347)*a | 6 | 99.4 | NA | 3,172,507 | NA | 1 | NA | 3.1 to 4.0 | (Pseudomonadota) Yoonia sp018402175 |
Only coverage values for the more complete (bold) assembly are provided. Genome assemblies determined to be more complete are in bold. MAGs falling within the top 16 most abundant bacteria in the mixed host/parasite or naïve host culture are denoted by an *.
aThe Yoonia MAG did not readily assemble from mixed host/parasite data, therefore the statistics provided are generated from naïve host data.
bMean reads per base.
cPercent identity using BLASTn and the NCBI rRNA_typestrains/16S_ribosomal_RNA database.
dTypical genome size of MAG species or genus if unavailable.
MAGs identified from Amoebophrya-infected K. veneficum culture with a minimum of 98% 16S rRNA gene BLASTn identity
| MAG BLAST ID (GenBank accession no.) . | Coverageb . | Flye ID (%)c . | Canu ID (%)c . | Flye length . | Canu length . | Flye # contigs . | Canu # contigs . | Typical genome size (Mb)d . | GTDB taxonomy . |
|---|---|---|---|---|---|---|---|---|---|
| E. aurantius strain C5* (CP180349) | 354 | 98.9 | 98.9 | 3,328,698 | 3,359,381 | 1 | 1 | ∼3.4 | (Pseudomonadota) E. aurantius |
| Marivita sp. CB1101* (CP180351) | 80 | 99.6 | 99.6 | 4,656,275 | 4,526,901 | 2 | 1 | 3.6 to 4.9 | (Pseudomonadota) Marivita sp030148515 |
| Imperialibacter sp. Rs* (CP180355) | 42 | 99.2 | 99.2 | 6,856,966 | 6,856,909 | 1 | 1 | 4.8 to 6.8 | (Bacteroidota) Imperialibacter |
| Limnobacter thiooxidans CS-K2 (PRJNA1103200) | 16 | 99.3 | 99.3 | 3,118,024 | 2,941,441 | 6 | 23 | ∼3.5 | (Pseudomonadota) Limnobacter sp902506325 |
| Minwuia thermotolerans SY3-13* (CP180352) | 58 | 97.8 | 97.8 | 4,635,690 | 4,611,058 | 1 | 1 | 4.6 to 4.9 | (Pseudomonadota) Minwuia |
| Nioella ostreopsis Z7-4 (JBLLNQ000000000) | 59 | 99.8 | 99.8 | 4,923,006 | 4,850,388 | 10 | 5 | ∼4.6 | (Pseudomonadota) N. ostreopsis |
| Roseicyclus marinus Dej080120_10* (CP180348) | 56 | 99.9 | 99.9 | 3,365,735 | 3,365,935 | 1 | 1 | ∼3.6 | (Pseudomonadota) Roseicyclus |
| Seohaeicola sp. SP36* (CP180350) | 40 | 99.7 | 99.7 | 4,282,476 | 4,159,599 | 5 | 1 | ∼4.5 | (Pseudomonadota) EhC02 sp0016508895 |
| Thalassospira australica NP 3b2 (JBLLNT000000000) | 23 | 99.7 | 99.5 | 5,225,359 | 4,831,494 | 12 | 26 | ∼4.3 | (Pseudomonadota) Thalassospira |
| Thalassobaculum salexigens A11D-306* (CP180353-4) | 17 | 97.5 | 99.1 | 4,788,243 | 4,768,590 | 2 | 5 | 4.9 to 5.1 | (Pseudomonadota) JANSYS01 |
| Polymorphobacter multimanifer 262-7 (CP180346) | 28 | 97.8 | 97.8 | 2,817,605 | 2,819,673 | 1 | 1 | 3.8 to 3.9 | (Pseudomonadota) Sandarakinorhabdus |
| Pikeienuella piscinae RR4-56 (PRJNA1103200) | 14 | 98.1 | 98.1 | 4,804,495 | 3,776,009 | 6 | 29 | 4.4 to 5.0 | (Pseudomonadota) Pikeienuella sp030424705 |
| Yoonia vestfoldensis SMR4r (CP180347)*a | 6 | 99.4 | NA | 3,172,507 | NA | 1 | NA | 3.1 to 4.0 | (Pseudomonadota) Yoonia sp018402175 |
| MAG BLAST ID (GenBank accession no.) . | Coverageb . | Flye ID (%)c . | Canu ID (%)c . | Flye length . | Canu length . | Flye # contigs . | Canu # contigs . | Typical genome size (Mb)d . | GTDB taxonomy . |
|---|---|---|---|---|---|---|---|---|---|
| E. aurantius strain C5* (CP180349) | 354 | 98.9 | 98.9 | 3,328,698 | 3,359,381 | 1 | 1 | ∼3.4 | (Pseudomonadota) E. aurantius |
| Marivita sp. CB1101* (CP180351) | 80 | 99.6 | 99.6 | 4,656,275 | 4,526,901 | 2 | 1 | 3.6 to 4.9 | (Pseudomonadota) Marivita sp030148515 |
| Imperialibacter sp. Rs* (CP180355) | 42 | 99.2 | 99.2 | 6,856,966 | 6,856,909 | 1 | 1 | 4.8 to 6.8 | (Bacteroidota) Imperialibacter |
| Limnobacter thiooxidans CS-K2 (PRJNA1103200) | 16 | 99.3 | 99.3 | 3,118,024 | 2,941,441 | 6 | 23 | ∼3.5 | (Pseudomonadota) Limnobacter sp902506325 |
| Minwuia thermotolerans SY3-13* (CP180352) | 58 | 97.8 | 97.8 | 4,635,690 | 4,611,058 | 1 | 1 | 4.6 to 4.9 | (Pseudomonadota) Minwuia |
| Nioella ostreopsis Z7-4 (JBLLNQ000000000) | 59 | 99.8 | 99.8 | 4,923,006 | 4,850,388 | 10 | 5 | ∼4.6 | (Pseudomonadota) N. ostreopsis |
| Roseicyclus marinus Dej080120_10* (CP180348) | 56 | 99.9 | 99.9 | 3,365,735 | 3,365,935 | 1 | 1 | ∼3.6 | (Pseudomonadota) Roseicyclus |
| Seohaeicola sp. SP36* (CP180350) | 40 | 99.7 | 99.7 | 4,282,476 | 4,159,599 | 5 | 1 | ∼4.5 | (Pseudomonadota) EhC02 sp0016508895 |
| Thalassospira australica NP 3b2 (JBLLNT000000000) | 23 | 99.7 | 99.5 | 5,225,359 | 4,831,494 | 12 | 26 | ∼4.3 | (Pseudomonadota) Thalassospira |
| Thalassobaculum salexigens A11D-306* (CP180353-4) | 17 | 97.5 | 99.1 | 4,788,243 | 4,768,590 | 2 | 5 | 4.9 to 5.1 | (Pseudomonadota) JANSYS01 |
| Polymorphobacter multimanifer 262-7 (CP180346) | 28 | 97.8 | 97.8 | 2,817,605 | 2,819,673 | 1 | 1 | 3.8 to 3.9 | (Pseudomonadota) Sandarakinorhabdus |
| Pikeienuella piscinae RR4-56 (PRJNA1103200) | 14 | 98.1 | 98.1 | 4,804,495 | 3,776,009 | 6 | 29 | 4.4 to 5.0 | (Pseudomonadota) Pikeienuella sp030424705 |
| Yoonia vestfoldensis SMR4r (CP180347)*a | 6 | 99.4 | NA | 3,172,507 | NA | 1 | NA | 3.1 to 4.0 | (Pseudomonadota) Yoonia sp018402175 |
Only coverage values for the more complete (bold) assembly are provided. Genome assemblies determined to be more complete are in bold. MAGs falling within the top 16 most abundant bacteria in the mixed host/parasite or naïve host culture are denoted by an *.
aThe Yoonia MAG did not readily assemble from mixed host/parasite data, therefore the statistics provided are generated from naïve host data.
bMean reads per base.
cPercent identity using BLASTn and the NCBI rRNA_typestrains/16S_ribosomal_RNA database.
dTypical genome size of MAG species or genus if unavailable.
This PDF is available to Subscribers Only
View Article Abstract & Purchase OptionsFor full access to this pdf, sign in to an existing account, or purchase an annual subscription.
