Table 3.
Open in new tab

Execution time in seconds of AIM (PIM), WFA2lib (CPU), WFA-GPU, BIMSA (PIM), and BIMSA-Hybrid (PIM) when aligning unbalanced real datasets.

ApplicationIllumina.150Illumina.250PacBio.CSSNanopore
WFA2lib0.81.29.2206.1
WFA-GPU1.21.65.358.5
BIMSA0.61.1182.4314.5
BIMSA-Hybrid0.61.17.6105.6
AIM-WFA1.22.2n/an/a
AIM-WFA-Adapt0.91.3n/an/a
AIM-NW53.5149.5n/an/a
ApplicationIllumina.150Illumina.250PacBio.CSSNanopore
WFA2lib0.81.29.2206.1
WFA-GPU1.21.65.358.5
BIMSA0.61.1182.4314.5
BIMSA-Hybrid0.61.17.6105.6
AIM-WFA1.22.2n/an/a
AIM-WFA-Adapt0.91.3n/an/a
AIM-NW53.5149.5n/an/a

Failed or unsupported experiments are marked as n/a.

Table 3.
Open in new tab

Execution time in seconds of AIM (PIM), WFA2lib (CPU), WFA-GPU, BIMSA (PIM), and BIMSA-Hybrid (PIM) when aligning unbalanced real datasets.

ApplicationIllumina.150Illumina.250PacBio.CSSNanopore
WFA2lib0.81.29.2206.1
WFA-GPU1.21.65.358.5
BIMSA0.61.1182.4314.5
BIMSA-Hybrid0.61.17.6105.6
AIM-WFA1.22.2n/an/a
AIM-WFA-Adapt0.91.3n/an/a
AIM-NW53.5149.5n/an/a
ApplicationIllumina.150Illumina.250PacBio.CSSNanopore
WFA2lib0.81.29.2206.1
WFA-GPU1.21.65.358.5
BIMSA0.61.1182.4314.5
BIMSA-Hybrid0.61.17.6105.6
AIM-WFA1.22.2n/an/a
AIM-WFA-Adapt0.91.3n/an/a
AIM-NW53.5149.5n/an/a

Failed or unsupported experiments are marked as n/a.

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