Statistical analysis of the final de novo genome assembly of Vigna subterranea, Lablab purpureus, Faidherbia albida, Sclerocarya birrea, and Moringa oleifera
Parameter . | . | V. subterranea . | L. purpureus . | F. albida . | S. birrea . | M. oleifera . | |||||
---|---|---|---|---|---|---|---|---|---|---|---|
. | . | Contig . | Scaffold . | Contig . | Scaffold . | Contig . | Scaffold . | Contig . | Scaffold . | Contig . | Scaffold . |
Length (bp) | N90 | 3,804 | 75,271 | 785 | 860 | 8,254 | 95,167 | 3,661 | 21,833 | 6,676 | 57,837 |
N80 | 7,872 | 197,296 | 8,009 | 61,348 | 16,321 | 251,730 | 7,649 | 82,385 | 16,503 | 241,828 | |
N70 | 11,464 | 325,826 | 16,144 | 205,392 | 24,165 | 380,587 | 11,885 | 155,416 | 25,754 | 441,152 | |
N60 | 15,122 | 474,616 | 24,010 | 359,168 | 32,440 | 534,880 | 16,393 | 243,236 | 35,081 | 644,014 | |
N50 | 19,154 | 640,666 | 32,223 | 621,373 | 42,029 | 692,039 | 21,349 | 335,449 | 45,268 | 957,246 | |
N40 | 23,828 | 865,081 | 42,690 | 950,808 | 53,479 | 881,230 | 26,914 | 485,585 | 58,406 | 1,446,587 | |
N30 | 29,382 | 1,133,817 | 54,401 | 1,489,002 | 69,167 | 1,197,388 | 33,914 | 705,409 | 74,710 | 1,878,891 | |
N20 | 36,928 | 1,503,436 | 70,790 | 1,971,744 | 92,147 | 1,501,241 | 43,984 | 1,098,843 | 96,626 | 2,565,629 | |
N10 | 49,695 | 2,049,645 | 95,643 | 2,606,483 | 139,388 | 1,925,526 | 62,875 | 2,089,533 | 136,952 | 3,296,678 | |
Number | N90 | 29,245 | 1,087 | 26,272 | 9,409 | 16,834 | 1,132 | 17,585 | 1,537 | 5,524 | 366 |
N80 | 20,188 | 664 | 9,869 | 715 | 11,420 | 727 | 11,678 | 787 | 3,574 | 191 | |
N70 | 14,829 | 453 | 6,576 | 366 | 8,198 | 514 | 8,313 | 499 | 2,542 | 125 | |
N60 | 10,943 | 315 | 4,630 | 222 | 5,898 | 370 | 6,001 | 332 | 1,833 | 84 | |
N50 | 7,932 | 220 | 3,244 | 138 | 4,151 | 263 | 4,277 | 214 | 1,295 | 56 | |
N40 | 5,532 | 147 | 2,204 | 86 | 2,791 | 179 | 2,929 | 131 | 876 | 37 | |
N30 | 3,590 | 93 | 1,403 | 52 | 1,728 | 114 | 1,857 | 74 | 553 | 24 | |
N20 | 2,024 | 52 | 776 | 29 | 912 | 64 | 1,012 | 36 | 300 | 13 | |
N10 | 806 | 22 | 306 | 12 | 326 | 26 | 387 | 12 | 112 | 6 | |
Maximum length | 148,612 | 3,684,321 | 240,194 | 5,699,750 | 529,842 | 4,746,824 | 227,874 | 5,850,796 | 449,426 | 4,637,711 | |
Total length | 512,516,846 | 535,052,523 | 385,303,786 | 395,472,305 | 644,456,383 | 653,726,905 | 322,977,033 | 330,983,508 | 213,739,255 | 216,759,177 | |
Total number ≥100 bp | 104,575 | 65,586 | 135,039 | 118,976 | 75,572 | 51,470 | 64,158 | 40,280 | 29,972 | 22,329 | |
Total number ≥2,000 bp | 35,465 | 2,920 | 15,984 | 4,265 | 26,459 | 5,758 | 22,172 | 4,852 | 8,300 | 2,166 | |
N content (%) | 4.21 | 2.57 | 1.42 | 2.42 | 1.39 |
Parameter . | . | V. subterranea . | L. purpureus . | F. albida . | S. birrea . | M. oleifera . | |||||
---|---|---|---|---|---|---|---|---|---|---|---|
. | . | Contig . | Scaffold . | Contig . | Scaffold . | Contig . | Scaffold . | Contig . | Scaffold . | Contig . | Scaffold . |
Length (bp) | N90 | 3,804 | 75,271 | 785 | 860 | 8,254 | 95,167 | 3,661 | 21,833 | 6,676 | 57,837 |
N80 | 7,872 | 197,296 | 8,009 | 61,348 | 16,321 | 251,730 | 7,649 | 82,385 | 16,503 | 241,828 | |
N70 | 11,464 | 325,826 | 16,144 | 205,392 | 24,165 | 380,587 | 11,885 | 155,416 | 25,754 | 441,152 | |
N60 | 15,122 | 474,616 | 24,010 | 359,168 | 32,440 | 534,880 | 16,393 | 243,236 | 35,081 | 644,014 | |
N50 | 19,154 | 640,666 | 32,223 | 621,373 | 42,029 | 692,039 | 21,349 | 335,449 | 45,268 | 957,246 | |
N40 | 23,828 | 865,081 | 42,690 | 950,808 | 53,479 | 881,230 | 26,914 | 485,585 | 58,406 | 1,446,587 | |
N30 | 29,382 | 1,133,817 | 54,401 | 1,489,002 | 69,167 | 1,197,388 | 33,914 | 705,409 | 74,710 | 1,878,891 | |
N20 | 36,928 | 1,503,436 | 70,790 | 1,971,744 | 92,147 | 1,501,241 | 43,984 | 1,098,843 | 96,626 | 2,565,629 | |
N10 | 49,695 | 2,049,645 | 95,643 | 2,606,483 | 139,388 | 1,925,526 | 62,875 | 2,089,533 | 136,952 | 3,296,678 | |
Number | N90 | 29,245 | 1,087 | 26,272 | 9,409 | 16,834 | 1,132 | 17,585 | 1,537 | 5,524 | 366 |
N80 | 20,188 | 664 | 9,869 | 715 | 11,420 | 727 | 11,678 | 787 | 3,574 | 191 | |
N70 | 14,829 | 453 | 6,576 | 366 | 8,198 | 514 | 8,313 | 499 | 2,542 | 125 | |
N60 | 10,943 | 315 | 4,630 | 222 | 5,898 | 370 | 6,001 | 332 | 1,833 | 84 | |
N50 | 7,932 | 220 | 3,244 | 138 | 4,151 | 263 | 4,277 | 214 | 1,295 | 56 | |
N40 | 5,532 | 147 | 2,204 | 86 | 2,791 | 179 | 2,929 | 131 | 876 | 37 | |
N30 | 3,590 | 93 | 1,403 | 52 | 1,728 | 114 | 1,857 | 74 | 553 | 24 | |
N20 | 2,024 | 52 | 776 | 29 | 912 | 64 | 1,012 | 36 | 300 | 13 | |
N10 | 806 | 22 | 306 | 12 | 326 | 26 | 387 | 12 | 112 | 6 | |
Maximum length | 148,612 | 3,684,321 | 240,194 | 5,699,750 | 529,842 | 4,746,824 | 227,874 | 5,850,796 | 449,426 | 4,637,711 | |
Total length | 512,516,846 | 535,052,523 | 385,303,786 | 395,472,305 | 644,456,383 | 653,726,905 | 322,977,033 | 330,983,508 | 213,739,255 | 216,759,177 | |
Total number ≥100 bp | 104,575 | 65,586 | 135,039 | 118,976 | 75,572 | 51,470 | 64,158 | 40,280 | 29,972 | 22,329 | |
Total number ≥2,000 bp | 35,465 | 2,920 | 15,984 | 4,265 | 26,459 | 5,758 | 22,172 | 4,852 | 8,300 | 2,166 | |
N content (%) | 4.21 | 2.57 | 1.42 | 2.42 | 1.39 |
Statistical analysis of the final de novo genome assembly of Vigna subterranea, Lablab purpureus, Faidherbia albida, Sclerocarya birrea, and Moringa oleifera
Parameter . | . | V. subterranea . | L. purpureus . | F. albida . | S. birrea . | M. oleifera . | |||||
---|---|---|---|---|---|---|---|---|---|---|---|
. | . | Contig . | Scaffold . | Contig . | Scaffold . | Contig . | Scaffold . | Contig . | Scaffold . | Contig . | Scaffold . |
Length (bp) | N90 | 3,804 | 75,271 | 785 | 860 | 8,254 | 95,167 | 3,661 | 21,833 | 6,676 | 57,837 |
N80 | 7,872 | 197,296 | 8,009 | 61,348 | 16,321 | 251,730 | 7,649 | 82,385 | 16,503 | 241,828 | |
N70 | 11,464 | 325,826 | 16,144 | 205,392 | 24,165 | 380,587 | 11,885 | 155,416 | 25,754 | 441,152 | |
N60 | 15,122 | 474,616 | 24,010 | 359,168 | 32,440 | 534,880 | 16,393 | 243,236 | 35,081 | 644,014 | |
N50 | 19,154 | 640,666 | 32,223 | 621,373 | 42,029 | 692,039 | 21,349 | 335,449 | 45,268 | 957,246 | |
N40 | 23,828 | 865,081 | 42,690 | 950,808 | 53,479 | 881,230 | 26,914 | 485,585 | 58,406 | 1,446,587 | |
N30 | 29,382 | 1,133,817 | 54,401 | 1,489,002 | 69,167 | 1,197,388 | 33,914 | 705,409 | 74,710 | 1,878,891 | |
N20 | 36,928 | 1,503,436 | 70,790 | 1,971,744 | 92,147 | 1,501,241 | 43,984 | 1,098,843 | 96,626 | 2,565,629 | |
N10 | 49,695 | 2,049,645 | 95,643 | 2,606,483 | 139,388 | 1,925,526 | 62,875 | 2,089,533 | 136,952 | 3,296,678 | |
Number | N90 | 29,245 | 1,087 | 26,272 | 9,409 | 16,834 | 1,132 | 17,585 | 1,537 | 5,524 | 366 |
N80 | 20,188 | 664 | 9,869 | 715 | 11,420 | 727 | 11,678 | 787 | 3,574 | 191 | |
N70 | 14,829 | 453 | 6,576 | 366 | 8,198 | 514 | 8,313 | 499 | 2,542 | 125 | |
N60 | 10,943 | 315 | 4,630 | 222 | 5,898 | 370 | 6,001 | 332 | 1,833 | 84 | |
N50 | 7,932 | 220 | 3,244 | 138 | 4,151 | 263 | 4,277 | 214 | 1,295 | 56 | |
N40 | 5,532 | 147 | 2,204 | 86 | 2,791 | 179 | 2,929 | 131 | 876 | 37 | |
N30 | 3,590 | 93 | 1,403 | 52 | 1,728 | 114 | 1,857 | 74 | 553 | 24 | |
N20 | 2,024 | 52 | 776 | 29 | 912 | 64 | 1,012 | 36 | 300 | 13 | |
N10 | 806 | 22 | 306 | 12 | 326 | 26 | 387 | 12 | 112 | 6 | |
Maximum length | 148,612 | 3,684,321 | 240,194 | 5,699,750 | 529,842 | 4,746,824 | 227,874 | 5,850,796 | 449,426 | 4,637,711 | |
Total length | 512,516,846 | 535,052,523 | 385,303,786 | 395,472,305 | 644,456,383 | 653,726,905 | 322,977,033 | 330,983,508 | 213,739,255 | 216,759,177 | |
Total number ≥100 bp | 104,575 | 65,586 | 135,039 | 118,976 | 75,572 | 51,470 | 64,158 | 40,280 | 29,972 | 22,329 | |
Total number ≥2,000 bp | 35,465 | 2,920 | 15,984 | 4,265 | 26,459 | 5,758 | 22,172 | 4,852 | 8,300 | 2,166 | |
N content (%) | 4.21 | 2.57 | 1.42 | 2.42 | 1.39 |
Parameter . | . | V. subterranea . | L. purpureus . | F. albida . | S. birrea . | M. oleifera . | |||||
---|---|---|---|---|---|---|---|---|---|---|---|
. | . | Contig . | Scaffold . | Contig . | Scaffold . | Contig . | Scaffold . | Contig . | Scaffold . | Contig . | Scaffold . |
Length (bp) | N90 | 3,804 | 75,271 | 785 | 860 | 8,254 | 95,167 | 3,661 | 21,833 | 6,676 | 57,837 |
N80 | 7,872 | 197,296 | 8,009 | 61,348 | 16,321 | 251,730 | 7,649 | 82,385 | 16,503 | 241,828 | |
N70 | 11,464 | 325,826 | 16,144 | 205,392 | 24,165 | 380,587 | 11,885 | 155,416 | 25,754 | 441,152 | |
N60 | 15,122 | 474,616 | 24,010 | 359,168 | 32,440 | 534,880 | 16,393 | 243,236 | 35,081 | 644,014 | |
N50 | 19,154 | 640,666 | 32,223 | 621,373 | 42,029 | 692,039 | 21,349 | 335,449 | 45,268 | 957,246 | |
N40 | 23,828 | 865,081 | 42,690 | 950,808 | 53,479 | 881,230 | 26,914 | 485,585 | 58,406 | 1,446,587 | |
N30 | 29,382 | 1,133,817 | 54,401 | 1,489,002 | 69,167 | 1,197,388 | 33,914 | 705,409 | 74,710 | 1,878,891 | |
N20 | 36,928 | 1,503,436 | 70,790 | 1,971,744 | 92,147 | 1,501,241 | 43,984 | 1,098,843 | 96,626 | 2,565,629 | |
N10 | 49,695 | 2,049,645 | 95,643 | 2,606,483 | 139,388 | 1,925,526 | 62,875 | 2,089,533 | 136,952 | 3,296,678 | |
Number | N90 | 29,245 | 1,087 | 26,272 | 9,409 | 16,834 | 1,132 | 17,585 | 1,537 | 5,524 | 366 |
N80 | 20,188 | 664 | 9,869 | 715 | 11,420 | 727 | 11,678 | 787 | 3,574 | 191 | |
N70 | 14,829 | 453 | 6,576 | 366 | 8,198 | 514 | 8,313 | 499 | 2,542 | 125 | |
N60 | 10,943 | 315 | 4,630 | 222 | 5,898 | 370 | 6,001 | 332 | 1,833 | 84 | |
N50 | 7,932 | 220 | 3,244 | 138 | 4,151 | 263 | 4,277 | 214 | 1,295 | 56 | |
N40 | 5,532 | 147 | 2,204 | 86 | 2,791 | 179 | 2,929 | 131 | 876 | 37 | |
N30 | 3,590 | 93 | 1,403 | 52 | 1,728 | 114 | 1,857 | 74 | 553 | 24 | |
N20 | 2,024 | 52 | 776 | 29 | 912 | 64 | 1,012 | 36 | 300 | 13 | |
N10 | 806 | 22 | 306 | 12 | 326 | 26 | 387 | 12 | 112 | 6 | |
Maximum length | 148,612 | 3,684,321 | 240,194 | 5,699,750 | 529,842 | 4,746,824 | 227,874 | 5,850,796 | 449,426 | 4,637,711 | |
Total length | 512,516,846 | 535,052,523 | 385,303,786 | 395,472,305 | 644,456,383 | 653,726,905 | 322,977,033 | 330,983,508 | 213,739,255 | 216,759,177 | |
Total number ≥100 bp | 104,575 | 65,586 | 135,039 | 118,976 | 75,572 | 51,470 | 64,158 | 40,280 | 29,972 | 22,329 | |
Total number ≥2,000 bp | 35,465 | 2,920 | 15,984 | 4,265 | 26,459 | 5,758 | 22,172 | 4,852 | 8,300 | 2,166 | |
N content (%) | 4.21 | 2.57 | 1.42 | 2.42 | 1.39 |
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