| Probe type . | Number of SNPs . | Genotype concordance . | Heterozygote concordance . |
|---|---|---|---|
| SNP probe | 53 (53) | 98.89% | 98.53% |
| Type I probe | 111 (109) | 98.26% | 96.93% |
| Type II probe | 4155 (4092) | 98.25% | 96.59% |
| C-to-T | 3875 (3818) | 98.27% | 96.62% |
| C-to-A | 193 (191) | 98.24% | 96.37% |
| C-to-G | 87 (83) | 97.75% | 96.05% |
| Overall | 4319 (4254) | 98.26% | 96.64% |
| Probe type . | Number of SNPs . | Genotype concordance . | Heterozygote concordance . |
|---|---|---|---|
| SNP probe | 53 (53) | 98.89% | 98.53% |
| Type I probe | 111 (109) | 98.26% | 96.93% |
| Type II probe | 4155 (4092) | 98.25% | 96.59% |
| C-to-T | 3875 (3818) | 98.27% | 96.62% |
| C-to-A | 193 (191) | 98.24% | 96.37% |
| C-to-G | 87 (83) | 97.75% | 96.05% |
| Overall | 4319 (4254) | 98.26% | 96.64% |
Note: SNPs with MAF < 0.01, HWE P < 1 × 10−6, R2 < 0.75 or > 1.1, or missing rate > 0.1 were excluded. Concordance was evaluated by comparison to the array genotyping data of the same samples. Number of SNPs with array genotyping data were shown in the parentheses. SNP, single nucleotide polymorphism; DFTJ, Dongfeng–Tongji; MAF, minor allele frequency; HWE, Hardy–Weinberg equilibrium.
| Probe type . | Number of SNPs . | Genotype concordance . | Heterozygote concordance . |
|---|---|---|---|
| SNP probe | 53 (53) | 98.89% | 98.53% |
| Type I probe | 111 (109) | 98.26% | 96.93% |
| Type II probe | 4155 (4092) | 98.25% | 96.59% |
| C-to-T | 3875 (3818) | 98.27% | 96.62% |
| C-to-A | 193 (191) | 98.24% | 96.37% |
| C-to-G | 87 (83) | 97.75% | 96.05% |
| Overall | 4319 (4254) | 98.26% | 96.64% |
| Probe type . | Number of SNPs . | Genotype concordance . | Heterozygote concordance . |
|---|---|---|---|
| SNP probe | 53 (53) | 98.89% | 98.53% |
| Type I probe | 111 (109) | 98.26% | 96.93% |
| Type II probe | 4155 (4092) | 98.25% | 96.59% |
| C-to-T | 3875 (3818) | 98.27% | 96.62% |
| C-to-A | 193 (191) | 98.24% | 96.37% |
| C-to-G | 87 (83) | 97.75% | 96.05% |
| Overall | 4319 (4254) | 98.26% | 96.64% |
Note: SNPs with MAF < 0.01, HWE P < 1 × 10−6, R2 < 0.75 or > 1.1, or missing rate > 0.1 were excluded. Concordance was evaluated by comparison to the array genotyping data of the same samples. Number of SNPs with array genotyping data were shown in the parentheses. SNP, single nucleotide polymorphism; DFTJ, Dongfeng–Tongji; MAF, minor allele frequency; HWE, Hardy–Weinberg equilibrium.
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