| Databases . | Filtering . | Peak-calling . | Reported-peaks . | Customizable setting of parameters for peak calling? . | Reported m|$^{6}$|A sites . |
|---|---|---|---|---|---|
| MeT-DB/ MeT-DBv2.0 | exomePeak | FDR<0.05, P <0.05, FC>1 and MAPQ>30 | unavailable | Searching the RRACH motif in the identified peaks | |
| RMBase/ RMBasev2.0 | exomePeak | FDR<0.05, P <0.01, MAPQ>30 and FC>2 | not allowed | Searching the RRACH motif in the identified peaks | |
| CVm6A | Picard (remove PCR duplicates) | MeTPeak | FDR<0.05, FE>1 and MAPQ>30 | not allowed | miCLIP-seq/PA-m|$^{6}$|A-seq |
| REPIC | Removed rRNAs, FastQ Screen | exomePeak, MeTPeak, MACS2 | FDR<0.05, MAPQ>20, FE>2 | not allowed | m|$^{6}$|A-seq and meRIP-seq |
| m6ASNP/ m6AVar/RMVar | MACS2, MeTPeak, Meyer’s method | Consensus peak by MSPC | not allowed | miCLIP/MAZTER-seq/m|$^{6}$|A-REF-seq/m|$^{6}$|ACE-seq/ DART-seq/PA-m|$^{6}$|A-Seq/m|$^{6}$|A-Label-seq (High confidence); meRIP-Seq (Medium confidence); Transcriptome-wide prediction (Low confidence) | |
| m6A-Atlas/ m6A-Atlas v2.0 | exomePeak2, MACS2 (v2.0), TRESS (v2.0) | Fold-enrichment>1 | not allowed | m|$^{6}$|A-REF-seq/MAZTER-seq/miCLIP-seq/ m|$^{6}$|A-CLIP-seq/PA-m|$^{6}$|A-seq/m|$^{6}$|A-seq with improved protocol/m|$^{6}$|A-CLIP-seq | |
| m6A-TSHub | exomePeak2 | P <1e-10, contain at least one DRACH | not allowed | miCLIP/m|$^{6}$|A-CLIP-seq, m|$^{6}$|A-REF-seq and DART-seq |
| Databases . | Filtering . | Peak-calling . | Reported-peaks . | Customizable setting of parameters for peak calling? . | Reported m|$^{6}$|A sites . |
|---|---|---|---|---|---|
| MeT-DB/ MeT-DBv2.0 | exomePeak | FDR<0.05, P <0.05, FC>1 and MAPQ>30 | unavailable | Searching the RRACH motif in the identified peaks | |
| RMBase/ RMBasev2.0 | exomePeak | FDR<0.05, P <0.01, MAPQ>30 and FC>2 | not allowed | Searching the RRACH motif in the identified peaks | |
| CVm6A | Picard (remove PCR duplicates) | MeTPeak | FDR<0.05, FE>1 and MAPQ>30 | not allowed | miCLIP-seq/PA-m|$^{6}$|A-seq |
| REPIC | Removed rRNAs, FastQ Screen | exomePeak, MeTPeak, MACS2 | FDR<0.05, MAPQ>20, FE>2 | not allowed | m|$^{6}$|A-seq and meRIP-seq |
| m6ASNP/ m6AVar/RMVar | MACS2, MeTPeak, Meyer’s method | Consensus peak by MSPC | not allowed | miCLIP/MAZTER-seq/m|$^{6}$|A-REF-seq/m|$^{6}$|ACE-seq/ DART-seq/PA-m|$^{6}$|A-Seq/m|$^{6}$|A-Label-seq (High confidence); meRIP-Seq (Medium confidence); Transcriptome-wide prediction (Low confidence) | |
| m6A-Atlas/ m6A-Atlas v2.0 | exomePeak2, MACS2 (v2.0), TRESS (v2.0) | Fold-enrichment>1 | not allowed | m|$^{6}$|A-REF-seq/MAZTER-seq/miCLIP-seq/ m|$^{6}$|A-CLIP-seq/PA-m|$^{6}$|A-seq/m|$^{6}$|A-seq with improved protocol/m|$^{6}$|A-CLIP-seq | |
| m6A-TSHub | exomePeak2 | P <1e-10, contain at least one DRACH | not allowed | miCLIP/m|$^{6}$|A-CLIP-seq, m|$^{6}$|A-REF-seq and DART-seq |
| Databases . | Filtering . | Peak-calling . | Reported-peaks . | Customizable setting of parameters for peak calling? . | Reported m|$^{6}$|A sites . |
|---|---|---|---|---|---|
| MeT-DB/ MeT-DBv2.0 | exomePeak | FDR<0.05, P <0.05, FC>1 and MAPQ>30 | unavailable | Searching the RRACH motif in the identified peaks | |
| RMBase/ RMBasev2.0 | exomePeak | FDR<0.05, P <0.01, MAPQ>30 and FC>2 | not allowed | Searching the RRACH motif in the identified peaks | |
| CVm6A | Picard (remove PCR duplicates) | MeTPeak | FDR<0.05, FE>1 and MAPQ>30 | not allowed | miCLIP-seq/PA-m|$^{6}$|A-seq |
| REPIC | Removed rRNAs, FastQ Screen | exomePeak, MeTPeak, MACS2 | FDR<0.05, MAPQ>20, FE>2 | not allowed | m|$^{6}$|A-seq and meRIP-seq |
| m6ASNP/ m6AVar/RMVar | MACS2, MeTPeak, Meyer’s method | Consensus peak by MSPC | not allowed | miCLIP/MAZTER-seq/m|$^{6}$|A-REF-seq/m|$^{6}$|ACE-seq/ DART-seq/PA-m|$^{6}$|A-Seq/m|$^{6}$|A-Label-seq (High confidence); meRIP-Seq (Medium confidence); Transcriptome-wide prediction (Low confidence) | |
| m6A-Atlas/ m6A-Atlas v2.0 | exomePeak2, MACS2 (v2.0), TRESS (v2.0) | Fold-enrichment>1 | not allowed | m|$^{6}$|A-REF-seq/MAZTER-seq/miCLIP-seq/ m|$^{6}$|A-CLIP-seq/PA-m|$^{6}$|A-seq/m|$^{6}$|A-seq with improved protocol/m|$^{6}$|A-CLIP-seq | |
| m6A-TSHub | exomePeak2 | P <1e-10, contain at least one DRACH | not allowed | miCLIP/m|$^{6}$|A-CLIP-seq, m|$^{6}$|A-REF-seq and DART-seq |
| Databases . | Filtering . | Peak-calling . | Reported-peaks . | Customizable setting of parameters for peak calling? . | Reported m|$^{6}$|A sites . |
|---|---|---|---|---|---|
| MeT-DB/ MeT-DBv2.0 | exomePeak | FDR<0.05, P <0.05, FC>1 and MAPQ>30 | unavailable | Searching the RRACH motif in the identified peaks | |
| RMBase/ RMBasev2.0 | exomePeak | FDR<0.05, P <0.01, MAPQ>30 and FC>2 | not allowed | Searching the RRACH motif in the identified peaks | |
| CVm6A | Picard (remove PCR duplicates) | MeTPeak | FDR<0.05, FE>1 and MAPQ>30 | not allowed | miCLIP-seq/PA-m|$^{6}$|A-seq |
| REPIC | Removed rRNAs, FastQ Screen | exomePeak, MeTPeak, MACS2 | FDR<0.05, MAPQ>20, FE>2 | not allowed | m|$^{6}$|A-seq and meRIP-seq |
| m6ASNP/ m6AVar/RMVar | MACS2, MeTPeak, Meyer’s method | Consensus peak by MSPC | not allowed | miCLIP/MAZTER-seq/m|$^{6}$|A-REF-seq/m|$^{6}$|ACE-seq/ DART-seq/PA-m|$^{6}$|A-Seq/m|$^{6}$|A-Label-seq (High confidence); meRIP-Seq (Medium confidence); Transcriptome-wide prediction (Low confidence) | |
| m6A-Atlas/ m6A-Atlas v2.0 | exomePeak2, MACS2 (v2.0), TRESS (v2.0) | Fold-enrichment>1 | not allowed | m|$^{6}$|A-REF-seq/MAZTER-seq/miCLIP-seq/ m|$^{6}$|A-CLIP-seq/PA-m|$^{6}$|A-seq/m|$^{6}$|A-seq with improved protocol/m|$^{6}$|A-CLIP-seq | |
| m6A-TSHub | exomePeak2 | P <1e-10, contain at least one DRACH | not allowed | miCLIP/m|$^{6}$|A-CLIP-seq, m|$^{6}$|A-REF-seq and DART-seq |
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