Table 1. Open in new tab The RdRp...

Table 1.

The RdRp families obtained from Pfam.

Pfam ID	Name	Model length	Family (HMM) version
PF06317	Arenavirus RNA polymerase	2048	14
PF00603	Influenza RNA-dependent RNA polymerase subunit PA	694	20
PF00604	Influenza RNA-dependent RNA polymerase subunit PB2	754	20
PF05919	Mitovirus RNA-dependent RNA polymerase	498	14
PF00602	Influenza RNA-dependent RNA polymerase subunit PB1	732	20
PF07925	Reovirus RNA-dependent RNA polymerase lambda 3	1271	14
PF00998	Viral RNA-dependent RNA polymerase	486	26
PF00978	RNA-dependent RNA polymerase	440	24
PF04196	Bunyavirus RNA-dependent RNA polymerase	742	15
PF04197	Birnavirus RNA-dependent RNA polymerase (VP1), palm domain	531	15
PF00946	Mononegavirales RNA-dependent RNA polymerase	1068	22
PF00680	Viral RNA-dependent RNA polymerase	462	23
PF02123	Viral RNA-directed RNA polymerase	479	19
PF05788	Orbivirus RNA-dependent RNA polymerase (VP1)	1297	15
PF00972	Flavivirus RdRp, fingers and palm domains	451	23
PF08467	Luteovirus RNA polymerase P1-P2/replicase	339	13
PF06478	Coronavirus RNA-dependent RNA polymerase, N-terminal	350	16
PF03431	RNA replicase, beta-chain	540	16
PF12426	RNA-dependent RNA polymerase	41	11

Pfam ID	Name	Model length	Family (HMM) version
PF06317	Arenavirus RNA polymerase	2048	14
PF00603	Influenza RNA-dependent RNA polymerase subunit PA	694	20
PF00604	Influenza RNA-dependent RNA polymerase subunit PB2	754	20
PF05919	Mitovirus RNA-dependent RNA polymerase	498	14
PF00602	Influenza RNA-dependent RNA polymerase subunit PB1	732	20
PF07925	Reovirus RNA-dependent RNA polymerase lambda 3	1271	14
PF00998	Viral RNA-dependent RNA polymerase	486	26
PF00978	RNA-dependent RNA polymerase	440	24
PF04196	Bunyavirus RNA-dependent RNA polymerase	742	15
PF04197	Birnavirus RNA-dependent RNA polymerase (VP1), palm domain	531	15
PF00946	Mononegavirales RNA-dependent RNA polymerase	1068	22
PF00680	Viral RNA-dependent RNA polymerase	462	23
PF02123	Viral RNA-directed RNA polymerase	479	19
PF05788	Orbivirus RNA-dependent RNA polymerase (VP1)	1297	15
PF00972	Flavivirus RdRp, fingers and palm domains	451	23
PF08467	Luteovirus RNA polymerase P1-P2/replicase	339	13
PF06478	Coronavirus RNA-dependent RNA polymerase, N-terminal	350	16
PF03431	RNA replicase, beta-chain	540	16
PF12426	RNA-dependent RNA polymerase	41	11