Comparison of model performance with a 1:1 positive-to-negative sample ratio; results are obtained from five-fold cross-validation; AUC and AUPR scores, along with their standard deviations, are reported; the best scores are highlighted in bold
| Models . | TEINet Dataset . | pMTnet Dataset . | VDJdb Dataset . | McPAS Dataset . | ||||
|---|---|---|---|---|---|---|---|---|
| . | AUC . | AUPR . | AUC . | AUPR . | AUC . | AUPR . | AUC . | AUPR . |
| TEINet | 0.608 |$\pm $| 0.008 | 0.615 |$\pm $| 0.008 | 0.619 |$\pm $| 0.005 | 0.612 |$\pm $| 0.006 | 0.588 |$\pm $| 0.005 | 0.597 |$\pm $| 0.004 | 0.687 |$\pm $| 0.021 | 0.697 |$\pm $| 0.021 |
| TEIM | 0.606 |$\pm $| 0.004 | 0.617 |$\pm $| 0.004 | 0.618 |$\pm $| 0.004 | 0.617 |$\pm $| 0.002 | 0.590 |$\pm $| 0.003 | 0.602 |$\pm $| 0.005 | 0.641 |$\pm $| 0.024 | 0.659 |$\pm $| 0.026 |
| pMTnet | 0.578 |$\pm $| 0.004 | 0.577 |$\pm $| 0.005 | 0.579 |$\pm $| 0.027 | 0.583 |$\pm $| 0.030 | 0.571 |$\pm $| 0.003 | 0.574 |$\pm $| 0.003 | 0.562 |$\pm $| 0.007 | 0.562 |$\pm $| 0.008 |
| GTE(Ours) | 0.734|$\pm $| 0.003 | 0.781|$\pm $| 0.003 | 0.813|$\pm $| 0.002 | 0.839|$\pm $| 0.003 | 0.775|$\pm $| 0.004 | 0.811|$\pm $| 0.004 | 0.743|$\pm $| 0.012 | 0.788|$\pm $| 0.017 |
| Models . | TEINet Dataset . | pMTnet Dataset . | VDJdb Dataset . | McPAS Dataset . | ||||
|---|---|---|---|---|---|---|---|---|
| . | AUC . | AUPR . | AUC . | AUPR . | AUC . | AUPR . | AUC . | AUPR . |
| TEINet | 0.608 |$\pm $| 0.008 | 0.615 |$\pm $| 0.008 | 0.619 |$\pm $| 0.005 | 0.612 |$\pm $| 0.006 | 0.588 |$\pm $| 0.005 | 0.597 |$\pm $| 0.004 | 0.687 |$\pm $| 0.021 | 0.697 |$\pm $| 0.021 |
| TEIM | 0.606 |$\pm $| 0.004 | 0.617 |$\pm $| 0.004 | 0.618 |$\pm $| 0.004 | 0.617 |$\pm $| 0.002 | 0.590 |$\pm $| 0.003 | 0.602 |$\pm $| 0.005 | 0.641 |$\pm $| 0.024 | 0.659 |$\pm $| 0.026 |
| pMTnet | 0.578 |$\pm $| 0.004 | 0.577 |$\pm $| 0.005 | 0.579 |$\pm $| 0.027 | 0.583 |$\pm $| 0.030 | 0.571 |$\pm $| 0.003 | 0.574 |$\pm $| 0.003 | 0.562 |$\pm $| 0.007 | 0.562 |$\pm $| 0.008 |
| GTE(Ours) | 0.734|$\pm $| 0.003 | 0.781|$\pm $| 0.003 | 0.813|$\pm $| 0.002 | 0.839|$\pm $| 0.003 | 0.775|$\pm $| 0.004 | 0.811|$\pm $| 0.004 | 0.743|$\pm $| 0.012 | 0.788|$\pm $| 0.017 |
Comparison of model performance with a 1:1 positive-to-negative sample ratio; results are obtained from five-fold cross-validation; AUC and AUPR scores, along with their standard deviations, are reported; the best scores are highlighted in bold
| Models . | TEINet Dataset . | pMTnet Dataset . | VDJdb Dataset . | McPAS Dataset . | ||||
|---|---|---|---|---|---|---|---|---|
| . | AUC . | AUPR . | AUC . | AUPR . | AUC . | AUPR . | AUC . | AUPR . |
| TEINet | 0.608 |$\pm $| 0.008 | 0.615 |$\pm $| 0.008 | 0.619 |$\pm $| 0.005 | 0.612 |$\pm $| 0.006 | 0.588 |$\pm $| 0.005 | 0.597 |$\pm $| 0.004 | 0.687 |$\pm $| 0.021 | 0.697 |$\pm $| 0.021 |
| TEIM | 0.606 |$\pm $| 0.004 | 0.617 |$\pm $| 0.004 | 0.618 |$\pm $| 0.004 | 0.617 |$\pm $| 0.002 | 0.590 |$\pm $| 0.003 | 0.602 |$\pm $| 0.005 | 0.641 |$\pm $| 0.024 | 0.659 |$\pm $| 0.026 |
| pMTnet | 0.578 |$\pm $| 0.004 | 0.577 |$\pm $| 0.005 | 0.579 |$\pm $| 0.027 | 0.583 |$\pm $| 0.030 | 0.571 |$\pm $| 0.003 | 0.574 |$\pm $| 0.003 | 0.562 |$\pm $| 0.007 | 0.562 |$\pm $| 0.008 |
| GTE(Ours) | 0.734|$\pm $| 0.003 | 0.781|$\pm $| 0.003 | 0.813|$\pm $| 0.002 | 0.839|$\pm $| 0.003 | 0.775|$\pm $| 0.004 | 0.811|$\pm $| 0.004 | 0.743|$\pm $| 0.012 | 0.788|$\pm $| 0.017 |
| Models . | TEINet Dataset . | pMTnet Dataset . | VDJdb Dataset . | McPAS Dataset . | ||||
|---|---|---|---|---|---|---|---|---|
| . | AUC . | AUPR . | AUC . | AUPR . | AUC . | AUPR . | AUC . | AUPR . |
| TEINet | 0.608 |$\pm $| 0.008 | 0.615 |$\pm $| 0.008 | 0.619 |$\pm $| 0.005 | 0.612 |$\pm $| 0.006 | 0.588 |$\pm $| 0.005 | 0.597 |$\pm $| 0.004 | 0.687 |$\pm $| 0.021 | 0.697 |$\pm $| 0.021 |
| TEIM | 0.606 |$\pm $| 0.004 | 0.617 |$\pm $| 0.004 | 0.618 |$\pm $| 0.004 | 0.617 |$\pm $| 0.002 | 0.590 |$\pm $| 0.003 | 0.602 |$\pm $| 0.005 | 0.641 |$\pm $| 0.024 | 0.659 |$\pm $| 0.026 |
| pMTnet | 0.578 |$\pm $| 0.004 | 0.577 |$\pm $| 0.005 | 0.579 |$\pm $| 0.027 | 0.583 |$\pm $| 0.030 | 0.571 |$\pm $| 0.003 | 0.574 |$\pm $| 0.003 | 0.562 |$\pm $| 0.007 | 0.562 |$\pm $| 0.008 |
| GTE(Ours) | 0.734|$\pm $| 0.003 | 0.781|$\pm $| 0.003 | 0.813|$\pm $| 0.002 | 0.839|$\pm $| 0.003 | 0.775|$\pm $| 0.004 | 0.811|$\pm $| 0.004 | 0.743|$\pm $| 0.012 | 0.788|$\pm $| 0.017 |
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