Single-cell multi-omics based on chromatin accessibility sequencing methods
Number of omics . | Type of omics . | Method . | Ref. . |
---|---|---|---|
Two omics data integration | Chromatin accessibility + DNA methylation | scNOMe-seq | [72] |
scCOOL-seq | [74] | ||
iscCOOL-seq | [82] | ||
Chromatin accessibility + transcriptome | sci-CAR | [76] | |
scCAT-seq | [80] | ||
SNARE-seq | [71] | ||
Paired-seq | [73] | ||
SHARE-seq | [60] | ||
ASTAR-seq | [77] | ||
SNARE-seq2 | [84] | ||
ISSAAC-seq | [91] | ||
sciATAC | [68] | ||
Chromatin accessibility + proteome | Perturb-ATAC | [75] | |
CRISPR-sciATAC | [88] | ||
ASAP-seq | [81] | ||
Spear-ATAC | [83] | ||
PHAGE-ATAC | [85] | ||
Chromatin accessibility + genome | scGET-seq | [89] | |
mtscATAC-seq | [69] | ||
Three omics data integration | Chromatin accessibility + DNA methylation + Transcriptome | scNMT-seq | [78] |
scChaRM-seq | [86] | ||
snmCAT-seq | [90] | ||
scNOMeRe-seq | [92] | ||
Chromatin accessibility + transcriptome + proteome | TEA-seq | [79] | |
DOGMA-seq | [81] | ||
NEAT-seq | [87] |
Number of omics . | Type of omics . | Method . | Ref. . |
---|---|---|---|
Two omics data integration | Chromatin accessibility + DNA methylation | scNOMe-seq | [72] |
scCOOL-seq | [74] | ||
iscCOOL-seq | [82] | ||
Chromatin accessibility + transcriptome | sci-CAR | [76] | |
scCAT-seq | [80] | ||
SNARE-seq | [71] | ||
Paired-seq | [73] | ||
SHARE-seq | [60] | ||
ASTAR-seq | [77] | ||
SNARE-seq2 | [84] | ||
ISSAAC-seq | [91] | ||
sciATAC | [68] | ||
Chromatin accessibility + proteome | Perturb-ATAC | [75] | |
CRISPR-sciATAC | [88] | ||
ASAP-seq | [81] | ||
Spear-ATAC | [83] | ||
PHAGE-ATAC | [85] | ||
Chromatin accessibility + genome | scGET-seq | [89] | |
mtscATAC-seq | [69] | ||
Three omics data integration | Chromatin accessibility + DNA methylation + Transcriptome | scNMT-seq | [78] |
scChaRM-seq | [86] | ||
snmCAT-seq | [90] | ||
scNOMeRe-seq | [92] | ||
Chromatin accessibility + transcriptome + proteome | TEA-seq | [79] | |
DOGMA-seq | [81] | ||
NEAT-seq | [87] |
Single-cell multi-omics based on chromatin accessibility sequencing methods
Number of omics . | Type of omics . | Method . | Ref. . |
---|---|---|---|
Two omics data integration | Chromatin accessibility + DNA methylation | scNOMe-seq | [72] |
scCOOL-seq | [74] | ||
iscCOOL-seq | [82] | ||
Chromatin accessibility + transcriptome | sci-CAR | [76] | |
scCAT-seq | [80] | ||
SNARE-seq | [71] | ||
Paired-seq | [73] | ||
SHARE-seq | [60] | ||
ASTAR-seq | [77] | ||
SNARE-seq2 | [84] | ||
ISSAAC-seq | [91] | ||
sciATAC | [68] | ||
Chromatin accessibility + proteome | Perturb-ATAC | [75] | |
CRISPR-sciATAC | [88] | ||
ASAP-seq | [81] | ||
Spear-ATAC | [83] | ||
PHAGE-ATAC | [85] | ||
Chromatin accessibility + genome | scGET-seq | [89] | |
mtscATAC-seq | [69] | ||
Three omics data integration | Chromatin accessibility + DNA methylation + Transcriptome | scNMT-seq | [78] |
scChaRM-seq | [86] | ||
snmCAT-seq | [90] | ||
scNOMeRe-seq | [92] | ||
Chromatin accessibility + transcriptome + proteome | TEA-seq | [79] | |
DOGMA-seq | [81] | ||
NEAT-seq | [87] |
Number of omics . | Type of omics . | Method . | Ref. . |
---|---|---|---|
Two omics data integration | Chromatin accessibility + DNA methylation | scNOMe-seq | [72] |
scCOOL-seq | [74] | ||
iscCOOL-seq | [82] | ||
Chromatin accessibility + transcriptome | sci-CAR | [76] | |
scCAT-seq | [80] | ||
SNARE-seq | [71] | ||
Paired-seq | [73] | ||
SHARE-seq | [60] | ||
ASTAR-seq | [77] | ||
SNARE-seq2 | [84] | ||
ISSAAC-seq | [91] | ||
sciATAC | [68] | ||
Chromatin accessibility + proteome | Perturb-ATAC | [75] | |
CRISPR-sciATAC | [88] | ||
ASAP-seq | [81] | ||
Spear-ATAC | [83] | ||
PHAGE-ATAC | [85] | ||
Chromatin accessibility + genome | scGET-seq | [89] | |
mtscATAC-seq | [69] | ||
Three omics data integration | Chromatin accessibility + DNA methylation + Transcriptome | scNMT-seq | [78] |
scChaRM-seq | [86] | ||
snmCAT-seq | [90] | ||
scNOMeRe-seq | [92] | ||
Chromatin accessibility + transcriptome + proteome | TEA-seq | [79] | |
DOGMA-seq | [81] | ||
NEAT-seq | [87] |
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