Families, Genera, and Species Contributing to the Random Forest Class Prediction Model on the Separate Time Intervals and Upward/Downward Trend per Time Interval
| Phylogenic Level . | Family/Genus/Species . | TI-A . | TI-B . | TI-C . |
|---|---|---|---|---|
| Family | Yersiniaceae | ↑ | ↑ | … |
| Comamonadaceae | … | ↓ | ↓ | |
| Genus | Bacteroides | ↓ | … | … |
| Enterococcus | ↑ | … | … | |
| Escherichia/Shigella | ↑ | … | ↑ | |
| Veillonella | ↑ | ↓ | … | |
| Ralstonia | … | ↓ | ↓ | |
| Staphylococcus | … | ↓ | ↓ | |
| Species | Afipia uncultured species | … | … | ↓ |
| Leuconostoc mesenteroides | ↑ | ↑ | … | |
| Streptococcus salivarius | … | ↓ | … | |
| AUC (95% CI) | 0.88 (.71–.98) | 0.74 (.57–.90) | 0.81 (.58–.98) | |
| Sensitivity | 1.0 | 1.0 | 0.81 | |
| Specificity | 0.5 | 0.45 | 0.66 | |
| OOB error rate, % | 25.5 | 33.3 | 26.7 |
| Phylogenic Level . | Family/Genus/Species . | TI-A . | TI-B . | TI-C . |
|---|---|---|---|---|
| Family | Yersiniaceae | ↑ | ↑ | … |
| Comamonadaceae | … | ↓ | ↓ | |
| Genus | Bacteroides | ↓ | … | … |
| Enterococcus | ↑ | … | … | |
| Escherichia/Shigella | ↑ | … | ↑ | |
| Veillonella | ↑ | ↓ | … | |
| Ralstonia | … | ↓ | ↓ | |
| Staphylococcus | … | ↓ | ↓ | |
| Species | Afipia uncultured species | … | … | ↓ |
| Leuconostoc mesenteroides | ↑ | ↑ | … | |
| Streptococcus salivarius | … | ↓ | … | |
| AUC (95% CI) | 0.88 (.71–.98) | 0.74 (.57–.90) | 0.81 (.58–.98) | |
| Sensitivity | 1.0 | 1.0 | 0.81 | |
| Specificity | 0.5 | 0.45 | 0.66 | |
| OOB error rate, % | 25.5 | 33.3 | 26.7 |
Abbreviations: AUC, area under the curve; CI, confidence interval; OOB, out of bag error; TI, time interval.
Families, Genera, and Species Contributing to the Random Forest Class Prediction Model on the Separate Time Intervals and Upward/Downward Trend per Time Interval
| Phylogenic Level . | Family/Genus/Species . | TI-A . | TI-B . | TI-C . |
|---|---|---|---|---|
| Family | Yersiniaceae | ↑ | ↑ | … |
| Comamonadaceae | … | ↓ | ↓ | |
| Genus | Bacteroides | ↓ | … | … |
| Enterococcus | ↑ | … | … | |
| Escherichia/Shigella | ↑ | … | ↑ | |
| Veillonella | ↑ | ↓ | … | |
| Ralstonia | … | ↓ | ↓ | |
| Staphylococcus | … | ↓ | ↓ | |
| Species | Afipia uncultured species | … | … | ↓ |
| Leuconostoc mesenteroides | ↑ | ↑ | … | |
| Streptococcus salivarius | … | ↓ | … | |
| AUC (95% CI) | 0.88 (.71–.98) | 0.74 (.57–.90) | 0.81 (.58–.98) | |
| Sensitivity | 1.0 | 1.0 | 0.81 | |
| Specificity | 0.5 | 0.45 | 0.66 | |
| OOB error rate, % | 25.5 | 33.3 | 26.7 |
| Phylogenic Level . | Family/Genus/Species . | TI-A . | TI-B . | TI-C . |
|---|---|---|---|---|
| Family | Yersiniaceae | ↑ | ↑ | … |
| Comamonadaceae | … | ↓ | ↓ | |
| Genus | Bacteroides | ↓ | … | … |
| Enterococcus | ↑ | … | … | |
| Escherichia/Shigella | ↑ | … | ↑ | |
| Veillonella | ↑ | ↓ | … | |
| Ralstonia | … | ↓ | ↓ | |
| Staphylococcus | … | ↓ | ↓ | |
| Species | Afipia uncultured species | … | … | ↓ |
| Leuconostoc mesenteroides | ↑ | ↑ | … | |
| Streptococcus salivarius | … | ↓ | … | |
| AUC (95% CI) | 0.88 (.71–.98) | 0.74 (.57–.90) | 0.81 (.58–.98) | |
| Sensitivity | 1.0 | 1.0 | 0.81 | |
| Specificity | 0.5 | 0.45 | 0.66 | |
| OOB error rate, % | 25.5 | 33.3 | 26.7 |
Abbreviations: AUC, area under the curve; CI, confidence interval; OOB, out of bag error; TI, time interval.
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