Comparison of genome quality and annotation between the genome of sika deer and the best published genome of red deer
| . | . | Sika deer (Cervus nippon) . | Red deer (Cervus elaphus) . |
|---|---|---|---|
| Assembly | Total sequence length (bp) | 2,500,646,934 | 3,438,623,608 |
| Total length without gaps (bp) | 2,500,501,634 | 1,960,832,178 | |
| Number of scaffolds | 588 | 11,479 | |
| Scaffold N50 (bp)/L50 | 78,786,809/12 | 107,358,006/13 | |
| Number of contigs | 2040 | 406,637 | |
| Contig N50 (bp)/L50 | 23,559,432/33 | 7944/64,532 | |
| Total number of chromosomes | 33 | 35 | |
| Anchored rate | 99.24% | 98.33% | |
| Annotation | Number of genes | 21,449 | 19,243 |
| Average gene length (bp) | 39,397.69 | 28,008.84 | |
| Average CDS length (bp) | 1617.26 | 1085.04 | |
| Average number of exons per gene | 9.29 | 6.5 | |
| Average exon length (bp) | 174.03 | 167.06 | |
| Average intron length (bp) | 4555.82 | 4755.75 |
| . | . | Sika deer (Cervus nippon) . | Red deer (Cervus elaphus) . |
|---|---|---|---|
| Assembly | Total sequence length (bp) | 2,500,646,934 | 3,438,623,608 |
| Total length without gaps (bp) | 2,500,501,634 | 1,960,832,178 | |
| Number of scaffolds | 588 | 11,479 | |
| Scaffold N50 (bp)/L50 | 78,786,809/12 | 107,358,006/13 | |
| Number of contigs | 2040 | 406,637 | |
| Contig N50 (bp)/L50 | 23,559,432/33 | 7944/64,532 | |
| Total number of chromosomes | 33 | 35 | |
| Anchored rate | 99.24% | 98.33% | |
| Annotation | Number of genes | 21,449 | 19,243 |
| Average gene length (bp) | 39,397.69 | 28,008.84 | |
| Average CDS length (bp) | 1617.26 | 1085.04 | |
| Average number of exons per gene | 9.29 | 6.5 | |
| Average exon length (bp) | 174.03 | 167.06 | |
| Average intron length (bp) | 4555.82 | 4755.75 |
Comparison of genome quality and annotation between the genome of sika deer and the best published genome of red deer
| . | . | Sika deer (Cervus nippon) . | Red deer (Cervus elaphus) . |
|---|---|---|---|
| Assembly | Total sequence length (bp) | 2,500,646,934 | 3,438,623,608 |
| Total length without gaps (bp) | 2,500,501,634 | 1,960,832,178 | |
| Number of scaffolds | 588 | 11,479 | |
| Scaffold N50 (bp)/L50 | 78,786,809/12 | 107,358,006/13 | |
| Number of contigs | 2040 | 406,637 | |
| Contig N50 (bp)/L50 | 23,559,432/33 | 7944/64,532 | |
| Total number of chromosomes | 33 | 35 | |
| Anchored rate | 99.24% | 98.33% | |
| Annotation | Number of genes | 21,449 | 19,243 |
| Average gene length (bp) | 39,397.69 | 28,008.84 | |
| Average CDS length (bp) | 1617.26 | 1085.04 | |
| Average number of exons per gene | 9.29 | 6.5 | |
| Average exon length (bp) | 174.03 | 167.06 | |
| Average intron length (bp) | 4555.82 | 4755.75 |
| . | . | Sika deer (Cervus nippon) . | Red deer (Cervus elaphus) . |
|---|---|---|---|
| Assembly | Total sequence length (bp) | 2,500,646,934 | 3,438,623,608 |
| Total length without gaps (bp) | 2,500,501,634 | 1,960,832,178 | |
| Number of scaffolds | 588 | 11,479 | |
| Scaffold N50 (bp)/L50 | 78,786,809/12 | 107,358,006/13 | |
| Number of contigs | 2040 | 406,637 | |
| Contig N50 (bp)/L50 | 23,559,432/33 | 7944/64,532 | |
| Total number of chromosomes | 33 | 35 | |
| Anchored rate | 99.24% | 98.33% | |
| Annotation | Number of genes | 21,449 | 19,243 |
| Average gene length (bp) | 39,397.69 | 28,008.84 | |
| Average CDS length (bp) | 1617.26 | 1085.04 | |
| Average number of exons per gene | 9.29 | 6.5 | |
| Average exon length (bp) | 174.03 | 167.06 | |
| Average intron length (bp) | 4555.82 | 4755.75 |
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