Overrepresented cis-elements in the promotors of DEGs in the grouped clusters
| Grouped clusters . | Discovered motifs . | Name of matched motif in Arabidopsis . | Occurrence in cluster genes with motif . | E-value . |
|---|---|---|---|---|
| Cluster 1 | GAGAGAGA | BPC5 | 46.5 | 1.67e-39 |
| TTTTTTTT | ABI3VP1 | 47.8 | 2.64e-28 | |
| CCGCCGCCG | ERF2 | 50.3 | 7.58e-16 | |
| TGCCACGTG | ABF2 | 35.9 | 1.9e-11 | |
| GAAGTTCTA | HSFA1E | 15.42 | 2.31e-10 | |
| Cluster 2 | GAGAGAGA | BPC5 | 65.05 | 7.65e-52 |
| CCTCCTCCT | TF3A | 47.2 | 2.83e-48 | |
| AAAAAAAAA | REM19 | 38.9 | 2.63e-30 | |
| GGCGGCGGC | ERF9 | 34.3 | 1.31e-28 | |
| CGGCGGCGG | RAP26 | 31.5 | 1.92e-16 | |
| Cluster 3 | CTCTCTCTCT | BPC6 | 50.1 | 3.31e-69 |
| ATGCTGATG | GATA1 | 51.3 | 7.01e-51 | |
| GGCGGCGGC | CRF4 | 50.4 | 2.87e-29 | |
| TCATCATCA | ZML1 | 48.6 | 5.72e-23 | |
| AGCGGCGGC | ESE3 | 41.2 | 2.28e-19 | |
| Cluster 4 | GAGAGAGA | BPC1 | 65.7 | 3.53e-78 |
| CCGCCGCCG | SHN3 | 47.4 | 3.78e-53 | |
| AAACCCTAA | TBP3 | 33.7 | 3.38e-49 | |
| TGGCGGCGG | ABR1 | 52.9 | 1.29e-42 | |
| ACGTCATCA | bZIP50 | 45.8 | 2.74e-25 | |
| Cluster 5 | GAGAGAGA | BPC1 | 62.1 | 2.03e-65 |
| CTCTCTCT | FRS9 | 61.2 | 1.8e-47 | |
| CCGCCGCCG | SHN3 | 53.6 | 3.84e-35 | |
| TGGCGGCGG | ERF3 | 31.2 | 3.32e-34 | |
| CATCATCAT | GATA15 | 30.1 | 2.35e-25 | |
| Cluster 6 | GAGAGAGA | BPC5 | 52.1 | 7.48e-73 |
| TTTTTTTT | VRN1 | 46.9 | 4.03e-71 | |
| CTCTCTCT | FRS9 | 46.8 | 1.15e-61 | |
| CCGCCGCCG | SHN3 | 40.1 | 5.72e-39 | |
| CCGTTTCAC | AS2 | 41.8 | 7.68e-35 |
| Grouped clusters . | Discovered motifs . | Name of matched motif in Arabidopsis . | Occurrence in cluster genes with motif . | E-value . |
|---|---|---|---|---|
| Cluster 1 | GAGAGAGA | BPC5 | 46.5 | 1.67e-39 |
| TTTTTTTT | ABI3VP1 | 47.8 | 2.64e-28 | |
| CCGCCGCCG | ERF2 | 50.3 | 7.58e-16 | |
| TGCCACGTG | ABF2 | 35.9 | 1.9e-11 | |
| GAAGTTCTA | HSFA1E | 15.42 | 2.31e-10 | |
| Cluster 2 | GAGAGAGA | BPC5 | 65.05 | 7.65e-52 |
| CCTCCTCCT | TF3A | 47.2 | 2.83e-48 | |
| AAAAAAAAA | REM19 | 38.9 | 2.63e-30 | |
| GGCGGCGGC | ERF9 | 34.3 | 1.31e-28 | |
| CGGCGGCGG | RAP26 | 31.5 | 1.92e-16 | |
| Cluster 3 | CTCTCTCTCT | BPC6 | 50.1 | 3.31e-69 |
| ATGCTGATG | GATA1 | 51.3 | 7.01e-51 | |
| GGCGGCGGC | CRF4 | 50.4 | 2.87e-29 | |
| TCATCATCA | ZML1 | 48.6 | 5.72e-23 | |
| AGCGGCGGC | ESE3 | 41.2 | 2.28e-19 | |
| Cluster 4 | GAGAGAGA | BPC1 | 65.7 | 3.53e-78 |
| CCGCCGCCG | SHN3 | 47.4 | 3.78e-53 | |
| AAACCCTAA | TBP3 | 33.7 | 3.38e-49 | |
| TGGCGGCGG | ABR1 | 52.9 | 1.29e-42 | |
| ACGTCATCA | bZIP50 | 45.8 | 2.74e-25 | |
| Cluster 5 | GAGAGAGA | BPC1 | 62.1 | 2.03e-65 |
| CTCTCTCT | FRS9 | 61.2 | 1.8e-47 | |
| CCGCCGCCG | SHN3 | 53.6 | 3.84e-35 | |
| TGGCGGCGG | ERF3 | 31.2 | 3.32e-34 | |
| CATCATCAT | GATA15 | 30.1 | 2.35e-25 | |
| Cluster 6 | GAGAGAGA | BPC5 | 52.1 | 7.48e-73 |
| TTTTTTTT | VRN1 | 46.9 | 4.03e-71 | |
| CTCTCTCT | FRS9 | 46.8 | 1.15e-61 | |
| CCGCCGCCG | SHN3 | 40.1 | 5.72e-39 | |
| CCGTTTCAC | AS2 | 41.8 | 7.68e-35 |
Overrepresented cis-elements in the promotors of DEGs in the grouped clusters
| Grouped clusters . | Discovered motifs . | Name of matched motif in Arabidopsis . | Occurrence in cluster genes with motif . | E-value . |
|---|---|---|---|---|
| Cluster 1 | GAGAGAGA | BPC5 | 46.5 | 1.67e-39 |
| TTTTTTTT | ABI3VP1 | 47.8 | 2.64e-28 | |
| CCGCCGCCG | ERF2 | 50.3 | 7.58e-16 | |
| TGCCACGTG | ABF2 | 35.9 | 1.9e-11 | |
| GAAGTTCTA | HSFA1E | 15.42 | 2.31e-10 | |
| Cluster 2 | GAGAGAGA | BPC5 | 65.05 | 7.65e-52 |
| CCTCCTCCT | TF3A | 47.2 | 2.83e-48 | |
| AAAAAAAAA | REM19 | 38.9 | 2.63e-30 | |
| GGCGGCGGC | ERF9 | 34.3 | 1.31e-28 | |
| CGGCGGCGG | RAP26 | 31.5 | 1.92e-16 | |
| Cluster 3 | CTCTCTCTCT | BPC6 | 50.1 | 3.31e-69 |
| ATGCTGATG | GATA1 | 51.3 | 7.01e-51 | |
| GGCGGCGGC | CRF4 | 50.4 | 2.87e-29 | |
| TCATCATCA | ZML1 | 48.6 | 5.72e-23 | |
| AGCGGCGGC | ESE3 | 41.2 | 2.28e-19 | |
| Cluster 4 | GAGAGAGA | BPC1 | 65.7 | 3.53e-78 |
| CCGCCGCCG | SHN3 | 47.4 | 3.78e-53 | |
| AAACCCTAA | TBP3 | 33.7 | 3.38e-49 | |
| TGGCGGCGG | ABR1 | 52.9 | 1.29e-42 | |
| ACGTCATCA | bZIP50 | 45.8 | 2.74e-25 | |
| Cluster 5 | GAGAGAGA | BPC1 | 62.1 | 2.03e-65 |
| CTCTCTCT | FRS9 | 61.2 | 1.8e-47 | |
| CCGCCGCCG | SHN3 | 53.6 | 3.84e-35 | |
| TGGCGGCGG | ERF3 | 31.2 | 3.32e-34 | |
| CATCATCAT | GATA15 | 30.1 | 2.35e-25 | |
| Cluster 6 | GAGAGAGA | BPC5 | 52.1 | 7.48e-73 |
| TTTTTTTT | VRN1 | 46.9 | 4.03e-71 | |
| CTCTCTCT | FRS9 | 46.8 | 1.15e-61 | |
| CCGCCGCCG | SHN3 | 40.1 | 5.72e-39 | |
| CCGTTTCAC | AS2 | 41.8 | 7.68e-35 |
| Grouped clusters . | Discovered motifs . | Name of matched motif in Arabidopsis . | Occurrence in cluster genes with motif . | E-value . |
|---|---|---|---|---|
| Cluster 1 | GAGAGAGA | BPC5 | 46.5 | 1.67e-39 |
| TTTTTTTT | ABI3VP1 | 47.8 | 2.64e-28 | |
| CCGCCGCCG | ERF2 | 50.3 | 7.58e-16 | |
| TGCCACGTG | ABF2 | 35.9 | 1.9e-11 | |
| GAAGTTCTA | HSFA1E | 15.42 | 2.31e-10 | |
| Cluster 2 | GAGAGAGA | BPC5 | 65.05 | 7.65e-52 |
| CCTCCTCCT | TF3A | 47.2 | 2.83e-48 | |
| AAAAAAAAA | REM19 | 38.9 | 2.63e-30 | |
| GGCGGCGGC | ERF9 | 34.3 | 1.31e-28 | |
| CGGCGGCGG | RAP26 | 31.5 | 1.92e-16 | |
| Cluster 3 | CTCTCTCTCT | BPC6 | 50.1 | 3.31e-69 |
| ATGCTGATG | GATA1 | 51.3 | 7.01e-51 | |
| GGCGGCGGC | CRF4 | 50.4 | 2.87e-29 | |
| TCATCATCA | ZML1 | 48.6 | 5.72e-23 | |
| AGCGGCGGC | ESE3 | 41.2 | 2.28e-19 | |
| Cluster 4 | GAGAGAGA | BPC1 | 65.7 | 3.53e-78 |
| CCGCCGCCG | SHN3 | 47.4 | 3.78e-53 | |
| AAACCCTAA | TBP3 | 33.7 | 3.38e-49 | |
| TGGCGGCGG | ABR1 | 52.9 | 1.29e-42 | |
| ACGTCATCA | bZIP50 | 45.8 | 2.74e-25 | |
| Cluster 5 | GAGAGAGA | BPC1 | 62.1 | 2.03e-65 |
| CTCTCTCT | FRS9 | 61.2 | 1.8e-47 | |
| CCGCCGCCG | SHN3 | 53.6 | 3.84e-35 | |
| TGGCGGCGG | ERF3 | 31.2 | 3.32e-34 | |
| CATCATCAT | GATA15 | 30.1 | 2.35e-25 | |
| Cluster 6 | GAGAGAGA | BPC5 | 52.1 | 7.48e-73 |
| TTTTTTTT | VRN1 | 46.9 | 4.03e-71 | |
| CTCTCTCT | FRS9 | 46.8 | 1.15e-61 | |
| CCGCCGCCG | SHN3 | 40.1 | 5.72e-39 | |
| CCGTTTCAC | AS2 | 41.8 | 7.68e-35 |
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