Table 2 Open in new tab Evaluation of...

Organism

Order

Sampled data (Gb)

Genome depth (×)

Mitogenome depth (×)

Assembled contigs

Assembled size (bp)

Elapsed time (min)

Memory usage (Gb)

Pohlia nutans

Bryales

0.2

0.29

99 735

3.4

31.4

1.43

66.4

99 734

31.8

4.3

184

99 733

36.1

32.2

Lycopodium japonicum

Lycopodiaceae

0.5

0.12

0.25

10.9

454 420

27.1

6.7

2.4

0.59

18.4

454 458

221.3

57.6

Taxus chinensis

Pinales

0.49

0.97

9.3

469 834

231.7

38.9

17.66

1.72

14.8

469 770

462.1

63.4

Juncus effusus

Poales

0.2

0.89

10.6

519 033

6.5

22.1

4.45

52.2

519 027

21.4

34.1

8.91

105.5

519 026

35.8

36.9

Luzula sylvatica

Poales

0.5

0.45

0.9

27.2

633 356

41.1

27.6

4.74

4.25

108

633 359

125.4

51.6

Arabidopsis thaliana

Brassicales

0.2

1.67

0.5

4.78

23.1

367 809

21.4

16.7

82.7

367 810

33.5

23.1

Amaranthus tricolor

Caryophyllales

0.2

0.43

9.4

382 400

7.1

25.9

2.15

51.2

382 383

30.5

32.1

15.02

367.2

382 432

208.8

51.9

Cuscuta europaea

Solanales

1.03

23.3

406 648

49.5

31.7

2.06

47.9

406 647

61.3

42.9

5.12

116.2

406 648

158.1

64.1

Helianthus annuus

Asterales

0.33

0.66

19.4

300 896

31.6

15.1

55.2

300 887

292.2

38.7

Jasminum sambac

Lamiales

0.2

0.39

0.5

0.99

17.1

508 933

10.6

42.1

15.78

236.8

508 930

413.1

72.0

Malus domestica

Rosales

0.2

0.28

7.6

396 942

8.5

9.4

1.42

37.8

396 949

21.2

9.9

5.69

160.8

396 949

86.5

10.2

Populus trichocarpa

Malpighiales

0.2

0.46

4.9

804 125

3.5

7.1

2.3

28.2

803 751

25.7

33.3

6.96

16.03

157.4

804 579

106.5

46.8

Salix wilsonii

Malpighiales

0.2

0.57

6.7

709 751

5.9

24.8

2.87

31.1

711 454

23.1

34.0

10.26

29.48

275.3

711 458

106.3

47.8

Table 2

Open in new tab

Evaluation of minimal sequencing data required for complete mitogenome assembly.

Organism	Order	Sampled data (Gb)	Genome depth (×)	Mitogenome depth (×)	Assembled contigs	Assembled size (bp)	Elapsed time (min)	Memory usage (Gb)
Pohlia nutans	Bryales	0.2	0.29	14	1	99 735	3.4	31.4
		1	1.43	66.4	1	99 734	19	31.8
		3	4.3	184	18	99 733	36.1	32.2
Lycopodium japonicum	Lycopodiaceae	0.5	0.12
		1	0.25	10.9	3	454 420	27.1	6.7
		2.4	0.59	18.4	5	454 458	221.3	57.6
Taxus chinensis	Pinales	5	0.49
		10	0.97	9.3	9	469 834	231.7	38.9
		17.66	1.72	14.8	8	469 770	462.1	63.4
Juncus effusus	Poales	0.2	0.89	10.6	7	519 033	6.5	22.1
		1	4.45	52.2	6	519 027	21.4	34.1
		2	8.91	105.5	5	519 026	35.8	36.9
Luzula sylvatica	Poales	0.5	0.45
		1	0.9	27.2	12	633 356	41.1	27.6
		4.74	4.25	108	18	633 359	125.4	51.6
Arabidopsis thaliana	Brassicales	0.2	1.67
		0.5	4.78	23.1	14	367 809	9	21.4
		2	16.7	82.7	29	367 810	33.5	23.1
Amaranthus tricolor	Caryophyllales	0.2	0.43	9.4	4	382 400	7.1	25.9
		1	2.15	51.2	4	382 383	30.5	32.1
		7	15.02	367.2	21	382 432	208.8	51.9
Cuscuta europaea	Solanales	1	1.03	23.3	7	406 648	49.5	31.7
		2	2.06	47.9	13	406 647	61.3	42.9
		5	5.12	116.2	16	406 648	158.1	64.1
Helianthus annuus	Asterales	1	0.33
		2	0.66	19.4	5	300 896	31.6	15.1
		6	2	55.2	7	300 887	292.2	38.7
Jasminum sambac	Lamiales	0.2	0.39
		0.5	0.99	17.1	4	508 933	10.6	42.1
		8	15.78	236.8	20	508 930	413.1	72.0
Malus domestica	Rosales	0.2	0.28	7.6	1	396 942	8.5	9.4
		1	1.42	37.8	3	396 949	21.2	9.9
		4	5.69	160.8	6	396 949	86.5	10.2
Populus trichocarpa	Malpighiales	0.2	0.46	4.9	10	804 125	3.5	7.1
		1	2.3	28.2	3	803 751	25.7	33.3
		6.96	16.03	157.4	7	804 579	106.5	46.8
Salix wilsonii	Malpighiales	0.2	0.57	6.7	1	709 751	5.9	24.8
		1	2.87	31.1	1	711 454	23.1	34.0
		10.26	29.48	275.3	3	711 458	106.3	47.8

Organism	Order	Sampled data (Gb)	Genome depth (×)	Mitogenome depth (×)	Assembled contigs	Assembled size (bp)	Elapsed time (min)	Memory usage (Gb)
Pohlia nutans	Bryales	0.2	0.29	14	1	99 735	3.4	31.4
		1	1.43	66.4	1	99 734	19	31.8
		3	4.3	184	18	99 733	36.1	32.2
Lycopodium japonicum	Lycopodiaceae	0.5	0.12
		1	0.25	10.9	3	454 420	27.1	6.7
		2.4	0.59	18.4	5	454 458	221.3	57.6
Taxus chinensis	Pinales	5	0.49
		10	0.97	9.3	9	469 834	231.7	38.9
		17.66	1.72	14.8	8	469 770	462.1	63.4
Juncus effusus	Poales	0.2	0.89	10.6	7	519 033	6.5	22.1
		1	4.45	52.2	6	519 027	21.4	34.1
		2	8.91	105.5	5	519 026	35.8	36.9
Luzula sylvatica	Poales	0.5	0.45
		1	0.9	27.2	12	633 356	41.1	27.6
		4.74	4.25	108	18	633 359	125.4	51.6
Arabidopsis thaliana	Brassicales	0.2	1.67
		0.5	4.78	23.1	14	367 809	9	21.4
		2	16.7	82.7	29	367 810	33.5	23.1
Amaranthus tricolor	Caryophyllales	0.2	0.43	9.4	4	382 400	7.1	25.9
		1	2.15	51.2	4	382 383	30.5	32.1
		7	15.02	367.2	21	382 432	208.8	51.9
Cuscuta europaea	Solanales	1	1.03	23.3	7	406 648	49.5	31.7
		2	2.06	47.9	13	406 647	61.3	42.9
		5	5.12	116.2	16	406 648	158.1	64.1
Helianthus annuus	Asterales	1	0.33
		2	0.66	19.4	5	300 896	31.6	15.1
		6	2	55.2	7	300 887	292.2	38.7
Jasminum sambac	Lamiales	0.2	0.39
		0.5	0.99	17.1	4	508 933	10.6	42.1
		8	15.78	236.8	20	508 930	413.1	72.0
Malus domestica	Rosales	0.2	0.28	7.6	1	396 942	8.5	9.4
		1	1.42	37.8	3	396 949	21.2	9.9
		4	5.69	160.8	6	396 949	86.5	10.2
Populus trichocarpa	Malpighiales	0.2	0.46	4.9	10	804 125	3.5	7.1
		1	2.3	28.2	3	803 751	25.7	33.3
		6.96	16.03	157.4	7	804 579	106.5	46.8
Salix wilsonii	Malpighiales	0.2	0.57	6.7	1	709 751	5.9	24.8
		1	2.87	31.1	1	711 454	23.1	34.0
		10.26	29.48	275.3	3	711 458	106.3	47.8

This Feature Is Available To Subscribers Only