Table 1.
Open in new tab

List of top five upregulated and downregulated DEGs obtained by transcriptome analysis of pregerminated seedlings treated with CaCl2, NaCl or both versus the control treatment (according to Supplemental Tables S1 to S3). Molecular or biochemical function of the DEGs was identified using the GO annotation tool (https://www.arabidopsis.org/tools/bulk/go/index.jsp)

TreatmentExpressionAccession no.NameMolecular/biochemical functionFold change
CaCl2UpregulatedAT5G14680…Adenine nucleotide alpha hydrolase-like49.77
AT4G16800…Methylglutaconyl-CoA hydratase36.86
AT5G26200…Transmembrane transport35.11
AT2G07050CAS1Cycloartenol synthase29.77
AT5G02710…Zinc/iron chelation27.5
DownregulatedAT5G65660…Hydroxyproline-rich glycoprotein−32.43
AT5G10860CBSX3Cystathionine beta-synthase−26.16
AT1G61340FBS1F-box protein binding−21.88
AT3G18080BGLU44B-S glucosidase−20.8
AT5G41020…MYB family transcription factor−20.75
NaClUpregulatedAT1G34580…Monosaccharide transmembrane transport15.98
AT3G10860…Cytochrome bc1 complex, subunit 813.9
AT1G02310MAN1Glycosyl hydrolase9.55
AT5G15960KIN1ABA signaling pathway component8.37
AT1G04450RIC3Intracellular calcium gradient maintenance7.0
DownregulatedAT2G29680CDC6ATP hydrolysis, cell division control−20.4
AT4G30400ATL13RING/U-box, protein ubiquitination−12.38
AT4G13200PG18Thylakoid membrane formation−12.37
AT5G04105…Small nuclear RNA−12.24
AT4G10810…Unknown−11.73
CaCl2–NaClUpregulatedAT2G34740PP2C28Protein phosphatase 2C24.44
AT5G62220GT18Galactosyltransferase16.93
AT5G60410SIZ1SUMO E3 ligase13.06
AT2G30105…LRR/ubiquitin-like10.73
AT3G28740CYP81D11Cytochrome p4509.86
DownregulatedAT5G66870ASL1Transcription activator−28.32
AT4G22380…Ribosomal protein−15.14
AT2G22800HAT9Homeobox protein−14.45
AT2G03470…MYB family transcription factor−12.68
AT3G46560TIM9Zinc finger-like, mitochondrial protein import−12.64
TreatmentExpressionAccession no.NameMolecular/biochemical functionFold change
CaCl2UpregulatedAT5G14680…Adenine nucleotide alpha hydrolase-like49.77
AT4G16800…Methylglutaconyl-CoA hydratase36.86
AT5G26200…Transmembrane transport35.11
AT2G07050CAS1Cycloartenol synthase29.77
AT5G02710…Zinc/iron chelation27.5
DownregulatedAT5G65660…Hydroxyproline-rich glycoprotein−32.43
AT5G10860CBSX3Cystathionine beta-synthase−26.16
AT1G61340FBS1F-box protein binding−21.88
AT3G18080BGLU44B-S glucosidase−20.8
AT5G41020…MYB family transcription factor−20.75
NaClUpregulatedAT1G34580…Monosaccharide transmembrane transport15.98
AT3G10860…Cytochrome bc1 complex, subunit 813.9
AT1G02310MAN1Glycosyl hydrolase9.55
AT5G15960KIN1ABA signaling pathway component8.37
AT1G04450RIC3Intracellular calcium gradient maintenance7.0
DownregulatedAT2G29680CDC6ATP hydrolysis, cell division control−20.4
AT4G30400ATL13RING/U-box, protein ubiquitination−12.38
AT4G13200PG18Thylakoid membrane formation−12.37
AT5G04105…Small nuclear RNA−12.24
AT4G10810…Unknown−11.73
CaCl2–NaClUpregulatedAT2G34740PP2C28Protein phosphatase 2C24.44
AT5G62220GT18Galactosyltransferase16.93
AT5G60410SIZ1SUMO E3 ligase13.06
AT2G30105…LRR/ubiquitin-like10.73
AT3G28740CYP81D11Cytochrome p4509.86
DownregulatedAT5G66870ASL1Transcription activator−28.32
AT4G22380…Ribosomal protein−15.14
AT2G22800HAT9Homeobox protein−14.45
AT2G03470…MYB family transcription factor−12.68
AT3G46560TIM9Zinc finger-like, mitochondrial protein import−12.64
Table 1.
Open in new tab

List of top five upregulated and downregulated DEGs obtained by transcriptome analysis of pregerminated seedlings treated with CaCl2, NaCl or both versus the control treatment (according to Supplemental Tables S1 to S3). Molecular or biochemical function of the DEGs was identified using the GO annotation tool (https://www.arabidopsis.org/tools/bulk/go/index.jsp)

TreatmentExpressionAccession no.NameMolecular/biochemical functionFold change
CaCl2UpregulatedAT5G14680…Adenine nucleotide alpha hydrolase-like49.77
AT4G16800…Methylglutaconyl-CoA hydratase36.86
AT5G26200…Transmembrane transport35.11
AT2G07050CAS1Cycloartenol synthase29.77
AT5G02710…Zinc/iron chelation27.5
DownregulatedAT5G65660…Hydroxyproline-rich glycoprotein−32.43
AT5G10860CBSX3Cystathionine beta-synthase−26.16
AT1G61340FBS1F-box protein binding−21.88
AT3G18080BGLU44B-S glucosidase−20.8
AT5G41020…MYB family transcription factor−20.75
NaClUpregulatedAT1G34580…Monosaccharide transmembrane transport15.98
AT3G10860…Cytochrome bc1 complex, subunit 813.9
AT1G02310MAN1Glycosyl hydrolase9.55
AT5G15960KIN1ABA signaling pathway component8.37
AT1G04450RIC3Intracellular calcium gradient maintenance7.0
DownregulatedAT2G29680CDC6ATP hydrolysis, cell division control−20.4
AT4G30400ATL13RING/U-box, protein ubiquitination−12.38
AT4G13200PG18Thylakoid membrane formation−12.37
AT5G04105…Small nuclear RNA−12.24
AT4G10810…Unknown−11.73
CaCl2–NaClUpregulatedAT2G34740PP2C28Protein phosphatase 2C24.44
AT5G62220GT18Galactosyltransferase16.93
AT5G60410SIZ1SUMO E3 ligase13.06
AT2G30105…LRR/ubiquitin-like10.73
AT3G28740CYP81D11Cytochrome p4509.86
DownregulatedAT5G66870ASL1Transcription activator−28.32
AT4G22380…Ribosomal protein−15.14
AT2G22800HAT9Homeobox protein−14.45
AT2G03470…MYB family transcription factor−12.68
AT3G46560TIM9Zinc finger-like, mitochondrial protein import−12.64
TreatmentExpressionAccession no.NameMolecular/biochemical functionFold change
CaCl2UpregulatedAT5G14680…Adenine nucleotide alpha hydrolase-like49.77
AT4G16800…Methylglutaconyl-CoA hydratase36.86
AT5G26200…Transmembrane transport35.11
AT2G07050CAS1Cycloartenol synthase29.77
AT5G02710…Zinc/iron chelation27.5
DownregulatedAT5G65660…Hydroxyproline-rich glycoprotein−32.43
AT5G10860CBSX3Cystathionine beta-synthase−26.16
AT1G61340FBS1F-box protein binding−21.88
AT3G18080BGLU44B-S glucosidase−20.8
AT5G41020…MYB family transcription factor−20.75
NaClUpregulatedAT1G34580…Monosaccharide transmembrane transport15.98
AT3G10860…Cytochrome bc1 complex, subunit 813.9
AT1G02310MAN1Glycosyl hydrolase9.55
AT5G15960KIN1ABA signaling pathway component8.37
AT1G04450RIC3Intracellular calcium gradient maintenance7.0
DownregulatedAT2G29680CDC6ATP hydrolysis, cell division control−20.4
AT4G30400ATL13RING/U-box, protein ubiquitination−12.38
AT4G13200PG18Thylakoid membrane formation−12.37
AT5G04105…Small nuclear RNA−12.24
AT4G10810…Unknown−11.73
CaCl2–NaClUpregulatedAT2G34740PP2C28Protein phosphatase 2C24.44
AT5G62220GT18Galactosyltransferase16.93
AT5G60410SIZ1SUMO E3 ligase13.06
AT2G30105…LRR/ubiquitin-like10.73
AT3G28740CYP81D11Cytochrome p4509.86
DownregulatedAT5G66870ASL1Transcription activator−28.32
AT4G22380…Ribosomal protein−15.14
AT2G22800HAT9Homeobox protein−14.45
AT2G03470…MYB family transcription factor−12.68
AT3G46560TIM9Zinc finger-like, mitochondrial protein import−12.64
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