. | MED4 . | MIT9313 . | Pro. core . |
---|---|---|---|
Origin of isolationa | |||
Isolation site | Mediterranean | Gulf Stream | — |
Isolation depth | Surface (5 m) | Deep (135 m) | — |
Selected iron-related genesa,b,c | |||
Ferritin—iron storage | 1 | 2 | 1 |
Flavodoxin (isiB)—iron-free electron transfer | 1 | 1 | 1 |
Ferredoxin (petF and others)—iron-requiring electron transfer | 6 | 7 | 3 |
idiA/afuA—putative iron ABC transporter, substrate binding protein | 1 | 1 | 1 |
futB—putative iron ABC transporter, permease component | 1 | 1 | 1 |
futC/sfuC—ABC transporter, ATP binding component, possibly iron transporter | 1 | 1 | 1 |
fur—ferric uptake regulator | 2 | 3 | 2 |
Cell physiology | |||
Cell size (diameter) | 0.5–0.7 μmd,e | 0.8–1.2 μme | — |
Light adaptationf | High light | Low light | — |
Nitrogen sources utilizedg | NH4, urea | NH4, urea, nitrite | — |
Copper toleranceh | Higher | Lower | — |
. | MED4 . | MIT9313 . | Pro. core . |
---|---|---|---|
Origin of isolationa | |||
Isolation site | Mediterranean | Gulf Stream | — |
Isolation depth | Surface (5 m) | Deep (135 m) | — |
Selected iron-related genesa,b,c | |||
Ferritin—iron storage | 1 | 2 | 1 |
Flavodoxin (isiB)—iron-free electron transfer | 1 | 1 | 1 |
Ferredoxin (petF and others)—iron-requiring electron transfer | 6 | 7 | 3 |
idiA/afuA—putative iron ABC transporter, substrate binding protein | 1 | 1 | 1 |
futB—putative iron ABC transporter, permease component | 1 | 1 | 1 |
futC/sfuC—ABC transporter, ATP binding component, possibly iron transporter | 1 | 1 | 1 |
fur—ferric uptake regulator | 2 | 3 | 2 |
Cell physiology | |||
Cell size (diameter) | 0.5–0.7 μmd,e | 0.8–1.2 μme | — |
Light adaptationf | High light | Low light | — |
Nitrogen sources utilizedg | NH4, urea | NH4, urea, nitrite | — |
Copper toleranceh | Higher | Lower | — |
For each iron-related gene listed, the number of orthologs present in each genome is shown, as well as the number of orthologs present in the Prochlorococcus (Pro.) core genome (that is, genes shared by all 13 sequenced Prochlorococcus).
Rocap et al. (2003).
MicrobesOnline (http://www.microbesonline.org/) (Dehal et al., 2010).
ProPortal (http://www.proportal.mit.edu/).
Morel et al. (1993).
Ting et al. (2007).
Moore and Chisholm (1999).
Moore et al. (2002).
Mann et al. (2002).
. | MED4 . | MIT9313 . | Pro. core . |
---|---|---|---|
Origin of isolationa | |||
Isolation site | Mediterranean | Gulf Stream | — |
Isolation depth | Surface (5 m) | Deep (135 m) | — |
Selected iron-related genesa,b,c | |||
Ferritin—iron storage | 1 | 2 | 1 |
Flavodoxin (isiB)—iron-free electron transfer | 1 | 1 | 1 |
Ferredoxin (petF and others)—iron-requiring electron transfer | 6 | 7 | 3 |
idiA/afuA—putative iron ABC transporter, substrate binding protein | 1 | 1 | 1 |
futB—putative iron ABC transporter, permease component | 1 | 1 | 1 |
futC/sfuC—ABC transporter, ATP binding component, possibly iron transporter | 1 | 1 | 1 |
fur—ferric uptake regulator | 2 | 3 | 2 |
Cell physiology | |||
Cell size (diameter) | 0.5–0.7 μmd,e | 0.8–1.2 μme | — |
Light adaptationf | High light | Low light | — |
Nitrogen sources utilizedg | NH4, urea | NH4, urea, nitrite | — |
Copper toleranceh | Higher | Lower | — |
. | MED4 . | MIT9313 . | Pro. core . |
---|---|---|---|
Origin of isolationa | |||
Isolation site | Mediterranean | Gulf Stream | — |
Isolation depth | Surface (5 m) | Deep (135 m) | — |
Selected iron-related genesa,b,c | |||
Ferritin—iron storage | 1 | 2 | 1 |
Flavodoxin (isiB)—iron-free electron transfer | 1 | 1 | 1 |
Ferredoxin (petF and others)—iron-requiring electron transfer | 6 | 7 | 3 |
idiA/afuA—putative iron ABC transporter, substrate binding protein | 1 | 1 | 1 |
futB—putative iron ABC transporter, permease component | 1 | 1 | 1 |
futC/sfuC—ABC transporter, ATP binding component, possibly iron transporter | 1 | 1 | 1 |
fur—ferric uptake regulator | 2 | 3 | 2 |
Cell physiology | |||
Cell size (diameter) | 0.5–0.7 μmd,e | 0.8–1.2 μme | — |
Light adaptationf | High light | Low light | — |
Nitrogen sources utilizedg | NH4, urea | NH4, urea, nitrite | — |
Copper toleranceh | Higher | Lower | — |
For each iron-related gene listed, the number of orthologs present in each genome is shown, as well as the number of orthologs present in the Prochlorococcus (Pro.) core genome (that is, genes shared by all 13 sequenced Prochlorococcus).
Rocap et al. (2003).
MicrobesOnline (http://www.microbesonline.org/) (Dehal et al., 2010).
ProPortal (http://www.proportal.mit.edu/).
Morel et al. (1993).
Ting et al. (2007).
Moore and Chisholm (1999).
Moore et al. (2002).
Mann et al. (2002).
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