Table 1. Open in new tab Significant...

Cluster

Description

−log10 P-value

Biological process

Translation

17.60

Gene expression

13.51

Protein metabolic process

8.26

Cellular macromolecule metabolic process

7.32

Biosynthetic process

6.66

Macromolecule metabolic process

5.39

Nitrogen compound metabolic process

4.77

Primary metabolic process

2.55

Cellular metabolic process

2.15

Transport

2.13

Macromolecule modification

1.80

Localization

1.68

Cell communication

1.47

Cellular process

1.38

Response to abiotic stimulus

6.39

Response to stress

6.11

Response to stimulus

5.11

Response to endogenous stimulus

4.39

Catabolic process

3.82

Carbohydrate metabolic process

2.28

Homeostatic process

2.20

Response to biotic stimulus

2.14

Multi-organism process

1.92

Secondary metabolic process

1.89

Precursor metabolites and energy generation

1.64

Regulation of biological quality

1.60

Cellular component

Intracellular ribonucleoprotein complex

10.00

Nonmembrane-bounded organelle

9.52

Macromolecular complex

5.33

Nucleolus

4.21

Nuclear part

3.85

Endosome

1.92

Membrane-enclosed lumen

1.66

Peroxisome

1.40

Microbody

1.40

Thylakoid

5.19

Extracellular region

4.22

Molecular function

Structural molecule activity

11.57

Nucleic acid binding

9.07

RNA binding

8.38

Nucleotide binding

3.80

Nucleoside-triphosphatase activity

3.62

Hydrolase activity, acting on acid anhydrides

3.04

Transporter activity

2.20

Translation factor activity, RNA binding

2.05

Transcription factor activity, sequence-specific DNA binding

2.09

Table 1.

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Significant functional categories of proteomic changes associated with clusters 1 and 2

Cluster	Description	−log10 P-value
	Biological process
1	Translation	17.60
1	Gene expression	13.51
1	Protein metabolic process	8.26
1	Cellular macromolecule metabolic process	7.32
1	Biosynthetic process	6.66
1	Macromolecule metabolic process	5.39
1	Nitrogen compound metabolic process	4.77
1	Primary metabolic process	2.55
1	Cellular metabolic process	2.15
1	Transport	2.13
1	Macromolecule modification	1.80
1	Localization	1.68
1	Cell communication	1.47
1	Cellular process	1.38
2	Response to abiotic stimulus	6.39
2	Response to stress	6.11
2	Response to stimulus	5.11
2	Response to endogenous stimulus	4.39
2	Catabolic process	3.82
2	Carbohydrate metabolic process	2.28
2	Homeostatic process	2.20
2	Response to biotic stimulus	2.14
2	Multi-organism process	1.92
2	Secondary metabolic process	1.89
2	Precursor metabolites and energy generation	1.64
2	Regulation of biological quality	1.60
	Cellular component
1	Intracellular ribonucleoprotein complex	10.00
1	Nonmembrane-bounded organelle	9.52
1	Macromolecular complex	5.33
1	Nucleolus	4.21
1	Nuclear part	3.85
1	Endosome	1.92
1	Membrane-enclosed lumen	1.66
1	Peroxisome	1.40
1	Microbody	1.40
2	Thylakoid	5.19
2	Extracellular region	4.22
	Molecular function
1	Structural molecule activity	11.57
1	Nucleic acid binding	9.07
1	RNA binding	8.38
1	Nucleotide binding	3.80
1	Nucleoside-triphosphatase activity	3.62
1	Hydrolase activity, acting on acid anhydrides	3.04
1	Transporter activity	2.20
1	Translation factor activity, RNA binding	2.05
2	Transcription factor activity, sequence-specific DNA binding	2.09

Cluster	Description	−log10 P-value
	Biological process
1	Translation	17.60
1	Gene expression	13.51
1	Protein metabolic process	8.26
1	Cellular macromolecule metabolic process	7.32
1	Biosynthetic process	6.66
1	Macromolecule metabolic process	5.39
1	Nitrogen compound metabolic process	4.77
1	Primary metabolic process	2.55
1	Cellular metabolic process	2.15
1	Transport	2.13
1	Macromolecule modification	1.80
1	Localization	1.68
1	Cell communication	1.47
1	Cellular process	1.38
2	Response to abiotic stimulus	6.39
2	Response to stress	6.11
2	Response to stimulus	5.11
2	Response to endogenous stimulus	4.39
2	Catabolic process	3.82
2	Carbohydrate metabolic process	2.28
2	Homeostatic process	2.20
2	Response to biotic stimulus	2.14
2	Multi-organism process	1.92
2	Secondary metabolic process	1.89
2	Precursor metabolites and energy generation	1.64
2	Regulation of biological quality	1.60
	Cellular component
1	Intracellular ribonucleoprotein complex	10.00
1	Nonmembrane-bounded organelle	9.52
1	Macromolecular complex	5.33
1	Nucleolus	4.21
1	Nuclear part	3.85
1	Endosome	1.92
1	Membrane-enclosed lumen	1.66
1	Peroxisome	1.40
1	Microbody	1.40
2	Thylakoid	5.19
2	Extracellular region	4.22
	Molecular function
1	Structural molecule activity	11.57
1	Nucleic acid binding	9.07
1	RNA binding	8.38
1	Nucleotide binding	3.80
1	Nucleoside-triphosphatase activity	3.62
1	Hydrolase activity, acting on acid anhydrides	3.04
1	Transporter activity	2.20
1	Translation factor activity, RNA binding	2.05
2	Transcription factor activity, sequence-specific DNA binding	2.09

Table of significant GO terms sorted by −log 10 P-values regarding the proteomic changes shown in Fig. 3C. A list of complete GO terms was created with “agriGO” and sent to “REVIGO” to remove redundant terms (Supek et al. 2011; Tian et al. 2017). Clusters 1 and 2 are corresponding to Fig. 3C.

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