Relative rate tests for comparing the molecular evolutionary rates of 16S rRNA, groEL and gyrB gene sequences between the lineages of the endosymbiont of Nysius plebeius, its free-living relatives and Buchnera aphidicola, the obligate endosymbionts of aphids
| Gene . | Lineage 1 . | Lineage 2 . | Outgroup . | K1a . | K2b . | K1–K2 . | Rate ratioc . | P-valued . |
|---|---|---|---|---|---|---|---|---|
| 16S rRNA | Endosymbiont of N. plebeius (AB576918) | Escherichia coli (U00096) and Pantoea agglomerans (AY691545) | Vibrio cholerae (CP001485) | 0.068 | 0.028 | 0.040 | 2.4 | 3.6 × 10−5 |
| groEL | Endosymbiont of N. plebeius (AB583951) | E. coli (U00096) and P. agglomerans (AB008142) | V. cholerae (CP001485) | 0.094 | 0.030 | 0.064 | 3.1 | 1.9 × 10−7 |
| gyrB | Endosymbiont of N. plebeius (AB583935) | E. coli (U00096) and P. ananatis (NC_013956) | V. cholerae (CP001485) | 0.212 | 0.060 | 0.152 | 3.5 | 1.3 × 10−7 |
| 16S rRNA | Endosymbiont of N. plebeius (AB576918) | Buchnera aphidicola str. APS (NC_002528) and B. aphidicola str. Sg (NC_004061) | V. cholerae (CP001485) | 0.053 | 0.066 | −0.013 | 0.80 | 0.28 |
| groEL | Endosymbiont of N. plebeius (AB583951) | B. aphidicola str. APS (NC_002528) and B. aphidicola str. Sg (NC_004061) | V. cholerae (CP001485) | 0.073 | 0.069 | 0.004 | 1.1 | 0.79 |
| gyrB | Endosymbiont of N. plebeius (AB583935) | B. aphidicola str. APS (NC_002528) and B. aphidicola str. Sg (NC_004061) | V. cholerae (CP001485) | 0.133 | 0.167 | −0.034 | 0.80 | 0.21 |
| Gene . | Lineage 1 . | Lineage 2 . | Outgroup . | K1a . | K2b . | K1–K2 . | Rate ratioc . | P-valued . |
|---|---|---|---|---|---|---|---|---|
| 16S rRNA | Endosymbiont of N. plebeius (AB576918) | Escherichia coli (U00096) and Pantoea agglomerans (AY691545) | Vibrio cholerae (CP001485) | 0.068 | 0.028 | 0.040 | 2.4 | 3.6 × 10−5 |
| groEL | Endosymbiont of N. plebeius (AB583951) | E. coli (U00096) and P. agglomerans (AB008142) | V. cholerae (CP001485) | 0.094 | 0.030 | 0.064 | 3.1 | 1.9 × 10−7 |
| gyrB | Endosymbiont of N. plebeius (AB583935) | E. coli (U00096) and P. ananatis (NC_013956) | V. cholerae (CP001485) | 0.212 | 0.060 | 0.152 | 3.5 | 1.3 × 10−7 |
| 16S rRNA | Endosymbiont of N. plebeius (AB576918) | Buchnera aphidicola str. APS (NC_002528) and B. aphidicola str. Sg (NC_004061) | V. cholerae (CP001485) | 0.053 | 0.066 | −0.013 | 0.80 | 0.28 |
| groEL | Endosymbiont of N. plebeius (AB583951) | B. aphidicola str. APS (NC_002528) and B. aphidicola str. Sg (NC_004061) | V. cholerae (CP001485) | 0.073 | 0.069 | 0.004 | 1.1 | 0.79 |
| gyrB | Endosymbiont of N. plebeius (AB583935) | B. aphidicola str. APS (NC_002528) and B. aphidicola str. Sg (NC_004061) | V. cholerae (CP001485) | 0.133 | 0.167 | −0.034 | 0.80 | 0.21 |
Estimated mean distance between lineage 1 and the last common ancestor of lineages 1 and 2.
Estimated mean distance between lineage 2 and the last common ancestor of lineages 1 and 2.
K1/K2.
P-values are estimated by the program RRTree (Robinson-Rechavi and Huchon, 2000). The numbers of nucleotide sites used are 1224, 1010 and 640 for 16S rRNA, groEL and gyrB genes, respectively.
Relative rate tests for comparing the molecular evolutionary rates of 16S rRNA, groEL and gyrB gene sequences between the lineages of the endosymbiont of Nysius plebeius, its free-living relatives and Buchnera aphidicola, the obligate endosymbionts of aphids
| Gene . | Lineage 1 . | Lineage 2 . | Outgroup . | K1a . | K2b . | K1–K2 . | Rate ratioc . | P-valued . |
|---|---|---|---|---|---|---|---|---|
| 16S rRNA | Endosymbiont of N. plebeius (AB576918) | Escherichia coli (U00096) and Pantoea agglomerans (AY691545) | Vibrio cholerae (CP001485) | 0.068 | 0.028 | 0.040 | 2.4 | 3.6 × 10−5 |
| groEL | Endosymbiont of N. plebeius (AB583951) | E. coli (U00096) and P. agglomerans (AB008142) | V. cholerae (CP001485) | 0.094 | 0.030 | 0.064 | 3.1 | 1.9 × 10−7 |
| gyrB | Endosymbiont of N. plebeius (AB583935) | E. coli (U00096) and P. ananatis (NC_013956) | V. cholerae (CP001485) | 0.212 | 0.060 | 0.152 | 3.5 | 1.3 × 10−7 |
| 16S rRNA | Endosymbiont of N. plebeius (AB576918) | Buchnera aphidicola str. APS (NC_002528) and B. aphidicola str. Sg (NC_004061) | V. cholerae (CP001485) | 0.053 | 0.066 | −0.013 | 0.80 | 0.28 |
| groEL | Endosymbiont of N. plebeius (AB583951) | B. aphidicola str. APS (NC_002528) and B. aphidicola str. Sg (NC_004061) | V. cholerae (CP001485) | 0.073 | 0.069 | 0.004 | 1.1 | 0.79 |
| gyrB | Endosymbiont of N. plebeius (AB583935) | B. aphidicola str. APS (NC_002528) and B. aphidicola str. Sg (NC_004061) | V. cholerae (CP001485) | 0.133 | 0.167 | −0.034 | 0.80 | 0.21 |
| Gene . | Lineage 1 . | Lineage 2 . | Outgroup . | K1a . | K2b . | K1–K2 . | Rate ratioc . | P-valued . |
|---|---|---|---|---|---|---|---|---|
| 16S rRNA | Endosymbiont of N. plebeius (AB576918) | Escherichia coli (U00096) and Pantoea agglomerans (AY691545) | Vibrio cholerae (CP001485) | 0.068 | 0.028 | 0.040 | 2.4 | 3.6 × 10−5 |
| groEL | Endosymbiont of N. plebeius (AB583951) | E. coli (U00096) and P. agglomerans (AB008142) | V. cholerae (CP001485) | 0.094 | 0.030 | 0.064 | 3.1 | 1.9 × 10−7 |
| gyrB | Endosymbiont of N. plebeius (AB583935) | E. coli (U00096) and P. ananatis (NC_013956) | V. cholerae (CP001485) | 0.212 | 0.060 | 0.152 | 3.5 | 1.3 × 10−7 |
| 16S rRNA | Endosymbiont of N. plebeius (AB576918) | Buchnera aphidicola str. APS (NC_002528) and B. aphidicola str. Sg (NC_004061) | V. cholerae (CP001485) | 0.053 | 0.066 | −0.013 | 0.80 | 0.28 |
| groEL | Endosymbiont of N. plebeius (AB583951) | B. aphidicola str. APS (NC_002528) and B. aphidicola str. Sg (NC_004061) | V. cholerae (CP001485) | 0.073 | 0.069 | 0.004 | 1.1 | 0.79 |
| gyrB | Endosymbiont of N. plebeius (AB583935) | B. aphidicola str. APS (NC_002528) and B. aphidicola str. Sg (NC_004061) | V. cholerae (CP001485) | 0.133 | 0.167 | −0.034 | 0.80 | 0.21 |
Estimated mean distance between lineage 1 and the last common ancestor of lineages 1 and 2.
Estimated mean distance between lineage 2 and the last common ancestor of lineages 1 and 2.
K1/K2.
P-values are estimated by the program RRTree (Robinson-Rechavi and Huchon, 2000). The numbers of nucleotide sites used are 1224, 1010 and 640 for 16S rRNA, groEL and gyrB genes, respectively.
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