Table 4 Open in new tab Newly acquired...

Gene

Populations

Mutation type

Allele frequency (%)

Mutation position

Nucleotide change

Amino-acid change

DVU2394

EN3

Deletion

2497229

−1: G

2 amino acids changed

SNP

2497736

C → T

Glu → Lys

EN5

SNP

2496979

T → C

Tyr → Cys

EN6

Deletion

2497411

−1: G

Frameshift mutation

EN7

Deletion

100

2497258

−18: GCAATTCACGCACGTTGC

6 amino acids loss

EN9

Deletion

2497708

−19:GAACAGTTCGCTACGGGCC

Frameshift mutation

Insertion

2497728

+12: GACCGCGGACAT

4 amino acids inserted

DVU2395

EN4

Deletion

100

2499096

−8: CGGCGAGC

Frameshift mutation

EN8

Insertion

2498544

+2: CG

4 amino acids changed

2499078

+14:CCTCATGCGCCACC

Frameshift mutation

EN9

Deletion

2499384

−1: T

Frameshift mutation

EN10

SNP

2498363

T → C

Silent mutation

SNP

2498737

T → C

Lys → Glu

SNP

2498935

G → A

Gln → STOP

EN12

SNP

100

2499244

G → A

Gln → STOP

DVU2396

EN1

SNP

2499926

G → A

Pro → Ser

SNP

2500012

G → T

Ser → STOP

EN2

Deletion

2499984

−1: C

Frameshift mutation

EN6

Deletion

2499735

−1: C

Frameshift mutation

DVU2402

EN2

SNP

2507986

G → A

Arg → Cys

DVU2405

EN5

SNP

2510695

C → A

Glu → STOP

EN11

Deletion

100

2510695

−1: C

Frameshift mutation

SNP

100

2510695

C → T

Glu → Lys

Table 4

Open in new tab

Newly acquired mutations in nitrogen regulatory protein C family (NRC) genes in the EN populations.

Gene	Populations	Mutation type	Allele frequency (%)	Mutation position	Nucleotide change	Amino-acid change
DVU2394	EN3	Deletion	16	2497229	−1: G	2 amino acids changed
	EN3	SNP	59	2497736	C → T	Glu → Lys
	EN5	SNP	16	2496979	T → C	Tyr → Cys
	EN6	Deletion	49	2497411	−1: G	Frameshift mutation
	EN7	Deletion	100	2497258	−18: GCAATTCACGCACGTTGC	6 amino acids loss
	EN9	Deletion	36	2497708	−19:GAACAGTTCGCTACGGGCC	Frameshift mutation
	EN9	Insertion	11	2497728	+12: GACCGCGGACAT	4 amino acids inserted
DVU2395	EN4	Deletion	100	2499096	−8: CGGCGAGC	Frameshift mutation
	EN8	Insertion	46	2498544	+2: CG	4 amino acids changed
	EN8		26	2499078	+14:CCTCATGCGCCACC	Frameshift mutation
	EN9	Deletion	54	2499384	−1: T	Frameshift mutation
	EN10	SNP	15	2498363	T → C	Silent mutation
		SNP	23	2498737	T → C	Lys → Glu
		SNP	45	2498935	G → A	Gln → STOP
	EN12	SNP	100	2499244	G → A	Gln → STOP
DVU2396	EN1	SNP	20	2499926	G → A	Pro → Ser
	EN1	SNP	72	2500012	G → T	Ser → STOP
	EN2	Deletion	98	2499984	−1: C	Frameshift mutation
	EN6	Deletion	42	2499735	−1: C	Frameshift mutation
DVU2402	EN2	SNP	96	2507986	G → A	Arg → Cys
DVU2405	EN5	SNP	81	2510695	C → A	Glu → STOP
	EN11	Deletion	100	2510695	−1: C	Frameshift mutation
	EN11	SNP	100	2510695	C → T	Glu → Lys

Gene	Populations	Mutation type	Allele frequency (%)	Mutation position	Nucleotide change	Amino-acid change
DVU2394	EN3	Deletion	16	2497229	−1: G	2 amino acids changed
	EN3	SNP	59	2497736	C → T	Glu → Lys
	EN5	SNP	16	2496979	T → C	Tyr → Cys
	EN6	Deletion	49	2497411	−1: G	Frameshift mutation
	EN7	Deletion	100	2497258	−18: GCAATTCACGCACGTTGC	6 amino acids loss
	EN9	Deletion	36	2497708	−19:GAACAGTTCGCTACGGGCC	Frameshift mutation
	EN9	Insertion	11	2497728	+12: GACCGCGGACAT	4 amino acids inserted
DVU2395	EN4	Deletion	100	2499096	−8: CGGCGAGC	Frameshift mutation
	EN8	Insertion	46	2498544	+2: CG	4 amino acids changed
	EN8		26	2499078	+14:CCTCATGCGCCACC	Frameshift mutation
	EN9	Deletion	54	2499384	−1: T	Frameshift mutation
	EN10	SNP	15	2498363	T → C	Silent mutation
		SNP	23	2498737	T → C	Lys → Glu
		SNP	45	2498935	G → A	Gln → STOP
	EN12	SNP	100	2499244	G → A	Gln → STOP
DVU2396	EN1	SNP	20	2499926	G → A	Pro → Ser
	EN1	SNP	72	2500012	G → T	Ser → STOP
	EN2	Deletion	98	2499984	−1: C	Frameshift mutation
	EN6	Deletion	42	2499735	−1: C	Frameshift mutation
DVU2402	EN2	SNP	96	2507986	G → A	Arg → Cys
DVU2405	EN5	SNP	81	2510695	C → A	Glu → STOP
	EN11	Deletion	100	2510695	−1: C	Frameshift mutation
	EN11	SNP	100	2510695	C → T	Glu → Lys

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