Table 3.
Open in new tab

Current database for eccDNA.

DatabaseWebsiteNumber of eccDNASpeciesFunctionReferences
CircleBasehttp://circlebase.maolab.org601,036Homo sapiensScores eccDNAs and helps to interpret the potential functions of eccDNA in the human genome using a powerful system, combined with six annotation sections, including “targeting genes”, “epigenetic regulations”, “regulatory elements”, “chromatin accessibility”, “chromatin interactions”, and “genetic variants”Zhao et al. (2022)
eccDNAdbhttp://www.eccdnadb.org1,270Homo sapiensAcquires known and novel eccDNAs in cancers by computational analysis of WGS data, and annotates and illustrates their potential role in human cancerPeng et al. (2022)
eccDNA Atlashttp://lcbb.swjtu.edu.cn/eccDNAatlas639,313Homo sapiens, Arabidopsis thaliana,
Drosophila
Mus musculus,
Cricetulus griseus,
Yeast,
Gallus gallus		Provides a high-quality and integrated resource for browsing, searching and analyzing eccDNAs, such as sequence, function/characteristic, validation strategies from multiple speciesZhong et al. (2023)
DatabaseWebsiteNumber of eccDNASpeciesFunctionReferences
CircleBasehttp://circlebase.maolab.org601,036Homo sapiensScores eccDNAs and helps to interpret the potential functions of eccDNA in the human genome using a powerful system, combined with six annotation sections, including “targeting genes”, “epigenetic regulations”, “regulatory elements”, “chromatin accessibility”, “chromatin interactions”, and “genetic variants”Zhao et al. (2022)
eccDNAdbhttp://www.eccdnadb.org1,270Homo sapiensAcquires known and novel eccDNAs in cancers by computational analysis of WGS data, and annotates and illustrates their potential role in human cancerPeng et al. (2022)
eccDNA Atlashttp://lcbb.swjtu.edu.cn/eccDNAatlas639,313Homo sapiens, Arabidopsis thaliana,
Drosophila
Mus musculus,
Cricetulus griseus,
Yeast,
Gallus gallus		Provides a high-quality and integrated resource for browsing, searching and analyzing eccDNAs, such as sequence, function/characteristic, validation strategies from multiple speciesZhong et al. (2023)
Table 3.
Open in new tab

Current database for eccDNA.

DatabaseWebsiteNumber of eccDNASpeciesFunctionReferences
CircleBasehttp://circlebase.maolab.org601,036Homo sapiensScores eccDNAs and helps to interpret the potential functions of eccDNA in the human genome using a powerful system, combined with six annotation sections, including “targeting genes”, “epigenetic regulations”, “regulatory elements”, “chromatin accessibility”, “chromatin interactions”, and “genetic variants”Zhao et al. (2022)
eccDNAdbhttp://www.eccdnadb.org1,270Homo sapiensAcquires known and novel eccDNAs in cancers by computational analysis of WGS data, and annotates and illustrates their potential role in human cancerPeng et al. (2022)
eccDNA Atlashttp://lcbb.swjtu.edu.cn/eccDNAatlas639,313Homo sapiens, Arabidopsis thaliana,
Drosophila
Mus musculus,
Cricetulus griseus,
Yeast,
Gallus gallus		Provides a high-quality and integrated resource for browsing, searching and analyzing eccDNAs, such as sequence, function/characteristic, validation strategies from multiple speciesZhong et al. (2023)
DatabaseWebsiteNumber of eccDNASpeciesFunctionReferences
CircleBasehttp://circlebase.maolab.org601,036Homo sapiensScores eccDNAs and helps to interpret the potential functions of eccDNA in the human genome using a powerful system, combined with six annotation sections, including “targeting genes”, “epigenetic regulations”, “regulatory elements”, “chromatin accessibility”, “chromatin interactions”, and “genetic variants”Zhao et al. (2022)
eccDNAdbhttp://www.eccdnadb.org1,270Homo sapiensAcquires known and novel eccDNAs in cancers by computational analysis of WGS data, and annotates and illustrates their potential role in human cancerPeng et al. (2022)
eccDNA Atlashttp://lcbb.swjtu.edu.cn/eccDNAatlas639,313Homo sapiens, Arabidopsis thaliana,
Drosophila
Mus musculus,
Cricetulus griseus,
Yeast,
Gallus gallus		Provides a high-quality and integrated resource for browsing, searching and analyzing eccDNAs, such as sequence, function/characteristic, validation strategies from multiple speciesZhong et al. (2023)
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