Table 2.
Open in new tab

Benchmarking results of PanKmer configured for moderate memory usage and moderate runtime (wall clock time) (16 rounds of k-mer decomposition).

CladeNo. of genomesPeak memory (GB)Time (min)
Typha465.56
Typha13818.61
Solanum41416.26
Solanum162062.87
Solanum4620215.19
Zea42050.12
Zea1671239.38
Zea5480783.1
H.sapiens43466.45
H.sapiens1635248.5
H.sapiens6438707.39
H.sapiens94401364.33
A.thaliana462.08
A.thaliana1667.98
A.thaliana64735.9
A.thaliana2567142.93
A.thaliana113515648.9
CladeNo. of genomesPeak memory (GB)Time (min)
Typha465.56
Typha13818.61
Solanum41416.26
Solanum162062.87
Solanum4620215.19
Zea42050.12
Zea1671239.38
Zea5480783.1
H.sapiens43466.45
H.sapiens1635248.5
H.sapiens6438707.39
H.sapiens94401364.33
A.thaliana462.08
A.thaliana1667.98
A.thaliana64735.9
A.thaliana2567142.93
A.thaliana113515648.9
Table 2.
Open in new tab

Benchmarking results of PanKmer configured for moderate memory usage and moderate runtime (wall clock time) (16 rounds of k-mer decomposition).

CladeNo. of genomesPeak memory (GB)Time (min)
Typha465.56
Typha13818.61
Solanum41416.26
Solanum162062.87
Solanum4620215.19
Zea42050.12
Zea1671239.38
Zea5480783.1
H.sapiens43466.45
H.sapiens1635248.5
H.sapiens6438707.39
H.sapiens94401364.33
A.thaliana462.08
A.thaliana1667.98
A.thaliana64735.9
A.thaliana2567142.93
A.thaliana113515648.9
CladeNo. of genomesPeak memory (GB)Time (min)
Typha465.56
Typha13818.61
Solanum41416.26
Solanum162062.87
Solanum4620215.19
Zea42050.12
Zea1671239.38
Zea5480783.1
H.sapiens43466.45
H.sapiens1635248.5
H.sapiens6438707.39
H.sapiens94401364.33
A.thaliana462.08
A.thaliana1667.98
A.thaliana64735.9
A.thaliana2567142.93
A.thaliana113515648.9
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