Results of different tools on three norovirus datasets. Assemblers failed to generate any complete contig for samples 1 and 2, so we used the longest raw reads as the seeds. For sample 3, we present results using both the longest raw read and the contig as seeds.
| . | sample 1 . | sample 2 . | ||||
|---|---|---|---|---|---|---|
| Tool . | Total mis . | Total gap . | Total error . | Total mis . | Total gap . | Total error . |
| seed | 323 | 316 | 639 | 304 | 257 | 561 |
| Medaka | 7 | 24 | 31 | 52 | 55 | 107 |
| Raon | 7 | 7 | 14 | 56 | 34 | 90 |
| PBDAG-Con | 2 | 18 | 20 | 39 | 48 | 87 |
| AccuVIR | 0 | 5 | 5 | 51 | 25 | 76 |
| HMMPolish | 2 | 3 | 5 | 48 | 27 | 75 |
| sample 3 (seed: raw reads) | sample 3 (seed: contig) | |||||
| Total mis | Total gap | Total error | Total mis | Total gap | Total error | |
| seed | 451 | 445 | 896 | 0 | 5 | 5 |
| Medaka | 6 | 27 | 33 | 6 | 27 | 33 |
| Raon | 0 | 17 | 17 | 0 | 14 | 14 |
| PBDAG-Con | 1 | 22 | 23 | 1 | 7 | 8 |
| AccuVIR | 0 | 7 | 7 | 0 | 4 | 4 |
| HMMPolish | 4 | 2 | 6 | 2 | 0 | 2 |
| . | sample 1 . | sample 2 . | ||||
|---|---|---|---|---|---|---|
| Tool . | Total mis . | Total gap . | Total error . | Total mis . | Total gap . | Total error . |
| seed | 323 | 316 | 639 | 304 | 257 | 561 |
| Medaka | 7 | 24 | 31 | 52 | 55 | 107 |
| Raon | 7 | 7 | 14 | 56 | 34 | 90 |
| PBDAG-Con | 2 | 18 | 20 | 39 | 48 | 87 |
| AccuVIR | 0 | 5 | 5 | 51 | 25 | 76 |
| HMMPolish | 2 | 3 | 5 | 48 | 27 | 75 |
| sample 3 (seed: raw reads) | sample 3 (seed: contig) | |||||
| Total mis | Total gap | Total error | Total mis | Total gap | Total error | |
| seed | 451 | 445 | 896 | 0 | 5 | 5 |
| Medaka | 6 | 27 | 33 | 6 | 27 | 33 |
| Raon | 0 | 17 | 17 | 0 | 14 | 14 |
| PBDAG-Con | 1 | 22 | 23 | 1 | 7 | 8 |
| AccuVIR | 0 | 7 | 7 | 0 | 4 | 4 |
| HMMPolish | 4 | 2 | 6 | 2 | 0 | 2 |
Results of different tools on three norovirus datasets. Assemblers failed to generate any complete contig for samples 1 and 2, so we used the longest raw reads as the seeds. For sample 3, we present results using both the longest raw read and the contig as seeds.
| . | sample 1 . | sample 2 . | ||||
|---|---|---|---|---|---|---|
| Tool . | Total mis . | Total gap . | Total error . | Total mis . | Total gap . | Total error . |
| seed | 323 | 316 | 639 | 304 | 257 | 561 |
| Medaka | 7 | 24 | 31 | 52 | 55 | 107 |
| Raon | 7 | 7 | 14 | 56 | 34 | 90 |
| PBDAG-Con | 2 | 18 | 20 | 39 | 48 | 87 |
| AccuVIR | 0 | 5 | 5 | 51 | 25 | 76 |
| HMMPolish | 2 | 3 | 5 | 48 | 27 | 75 |
| sample 3 (seed: raw reads) | sample 3 (seed: contig) | |||||
| Total mis | Total gap | Total error | Total mis | Total gap | Total error | |
| seed | 451 | 445 | 896 | 0 | 5 | 5 |
| Medaka | 6 | 27 | 33 | 6 | 27 | 33 |
| Raon | 0 | 17 | 17 | 0 | 14 | 14 |
| PBDAG-Con | 1 | 22 | 23 | 1 | 7 | 8 |
| AccuVIR | 0 | 7 | 7 | 0 | 4 | 4 |
| HMMPolish | 4 | 2 | 6 | 2 | 0 | 2 |
| . | sample 1 . | sample 2 . | ||||
|---|---|---|---|---|---|---|
| Tool . | Total mis . | Total gap . | Total error . | Total mis . | Total gap . | Total error . |
| seed | 323 | 316 | 639 | 304 | 257 | 561 |
| Medaka | 7 | 24 | 31 | 52 | 55 | 107 |
| Raon | 7 | 7 | 14 | 56 | 34 | 90 |
| PBDAG-Con | 2 | 18 | 20 | 39 | 48 | 87 |
| AccuVIR | 0 | 5 | 5 | 51 | 25 | 76 |
| HMMPolish | 2 | 3 | 5 | 48 | 27 | 75 |
| sample 3 (seed: raw reads) | sample 3 (seed: contig) | |||||
| Total mis | Total gap | Total error | Total mis | Total gap | Total error | |
| seed | 451 | 445 | 896 | 0 | 5 | 5 |
| Medaka | 6 | 27 | 33 | 6 | 27 | 33 |
| Raon | 0 | 17 | 17 | 0 | 14 | 14 |
| PBDAG-Con | 1 | 22 | 23 | 1 | 7 | 8 |
| AccuVIR | 0 | 7 | 7 | 0 | 4 | 4 |
| HMMPolish | 4 | 2 | 6 | 2 | 0 | 2 |
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