Table 2 Open in new tab Results on... | Oxford Academic

Table 2

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Results on simulated H3N2 Nanopore sequencing data for different depths

		HA			NA			Other		Total
	tool	len	mis	gap	len	mis	gap	mis	gap	mis	gap	Cov_*
50x	seed	1822	130	165	1514	67	135	571	838	768	1138	1
	Medaka	1773	7	15	1476	4	9	22	119	33	143	1
	Racon	1788	27	47	1384	0	6	69	138	96	191	0.98
	PBDAG-Con	1758	1	10	1466	0	17	4	110	5	137	1
	AccuVIR	1764	2	12	1468	0	11	4	78	6	101	1
	HMMPolish	1763	2	12	1465	0	6	12	29	14	47	1
100x	seed	1825	72	118	1513	106	119	473	819	651	1056	1
	Medaka	1767	5	8	1477	6	14	69	171	80	193	1
	Racon	1621	0	0	1195	2	6	82	89	84	95	0.79
	PBDAG-Con	1757	0	11	1465	1	20	0	74	1	105	1
	AccuVIR	1769	0	8	1472	6	6	10	33	16	47	1
	HMMPolish	1761	0	7	1465	1	10	3	11	4	28	1
200x	seed	1788	45	83	1514	71	108	557	958	673	1149	1
	Medaka	1768	2	7	1473	0	6	31	101	33	114	1
	Racon	1680	0	2	1399	0	0	5	45	5	47	0.97
	PBDAG-Con	1762	0	9	1459	1	11	14	98	15	118	1
	AccuVIR	1762	0	6	1468	0	9	5	88	5	103	1
	HMMPolish	1761	0	2	1459	1	5	4	8	5	15	1

		HA			NA			Other		Total
	tool	len	mis	gap	len	mis	gap	mis	gap	mis	gap	Cov_*
50x	seed	1822	130	165	1514	67	135	571	838	768	1138	1
	Medaka	1773	7	15	1476	4	9	22	119	33	143	1
	Racon	1788	27	47	1384	0	6	69	138	96	191	0.98
	PBDAG-Con	1758	1	10	1466	0	17	4	110	5	137	1
	AccuVIR	1764	2	12	1468	0	11	4	78	6	101	1
	HMMPolish	1763	2	12	1465	0	6	12	29	14	47	1
100x	seed	1825	72	118	1513	106	119	473	819	651	1056	1
	Medaka	1767	5	8	1477	6	14	69	171	80	193	1
	Racon	1621	0	0	1195	2	6	82	89	84	95	0.79
	PBDAG-Con	1757	0	11	1465	1	20	0	74	1	105	1
	AccuVIR	1769	0	8	1472	6	6	10	33	16	47	1
	HMMPolish	1761	0	7	1465	1	10	3	11	4	28	1
200x	seed	1788	45	83	1514	71	108	557	958	673	1149	1
	Medaka	1768	2	7	1473	0	6	31	101	33	114	1
	Racon	1680	0	2	1399	0	0	5	45	5	47	0.97
	PBDAG-Con	1762	0	9	1459	1	11	14	98	15	118	1
	AccuVIR	1762	0	6	1468	0	9	5	88	5	103	1
	HMMPolish	1761	0	2	1459	1	5	4	8	5	15	1

Cov_*: Coverage of outputs on all segments. This number reflects the completeness of the results by each polisher.

Table 2

Open in new tab

Results on simulated H3N2 Nanopore sequencing data for different depths

		HA			NA			Other		Total
	tool	len	mis	gap	len	mis	gap	mis	gap	mis	gap	Cov_*
50x	seed	1822	130	165	1514	67	135	571	838	768	1138	1
	Medaka	1773	7	15	1476	4	9	22	119	33	143	1
	Racon	1788	27	47	1384	0	6	69	138	96	191	0.98
	PBDAG-Con	1758	1	10	1466	0	17	4	110	5	137	1
	AccuVIR	1764	2	12	1468	0	11	4	78	6	101	1
	HMMPolish	1763	2	12	1465	0	6	12	29	14	47	1
100x	seed	1825	72	118	1513	106	119	473	819	651	1056	1
	Medaka	1767	5	8	1477	6	14	69	171	80	193	1
	Racon	1621	0	0	1195	2	6	82	89	84	95	0.79
	PBDAG-Con	1757	0	11	1465	1	20	0	74	1	105	1
	AccuVIR	1769	0	8	1472	6	6	10	33	16	47	1
	HMMPolish	1761	0	7	1465	1	10	3	11	4	28	1
200x	seed	1788	45	83	1514	71	108	557	958	673	1149	1
	Medaka	1768	2	7	1473	0	6	31	101	33	114	1
	Racon	1680	0	2	1399	0	0	5	45	5	47	0.97
	PBDAG-Con	1762	0	9	1459	1	11	14	98	15	118	1
	AccuVIR	1762	0	6	1468	0	9	5	88	5	103	1
	HMMPolish	1761	0	2	1459	1	5	4	8	5	15	1

		HA			NA			Other		Total
	tool	len	mis	gap	len	mis	gap	mis	gap	mis	gap	Cov_*
50x	seed	1822	130	165	1514	67	135	571	838	768	1138	1
	Medaka	1773	7	15	1476	4	9	22	119	33	143	1
	Racon	1788	27	47	1384	0	6	69	138	96	191	0.98
	PBDAG-Con	1758	1	10	1466	0	17	4	110	5	137	1
	AccuVIR	1764	2	12	1468	0	11	4	78	6	101	1
	HMMPolish	1763	2	12	1465	0	6	12	29	14	47	1
100x	seed	1825	72	118	1513	106	119	473	819	651	1056	1
	Medaka	1767	5	8	1477	6	14	69	171	80	193	1
	Racon	1621	0	0	1195	2	6	82	89	84	95	0.79
	PBDAG-Con	1757	0	11	1465	1	20	0	74	1	105	1
	AccuVIR	1769	0	8	1472	6	6	10	33	16	47	1
	HMMPolish	1761	0	7	1465	1	10	3	11	4	28	1
200x	seed	1788	45	83	1514	71	108	557	958	673	1149	1
	Medaka	1768	2	7	1473	0	6	31	101	33	114	1
	Racon	1680	0	2	1399	0	0	5	45	5	47	0.97
	PBDAG-Con	1762	0	9	1459	1	11	14	98	15	118	1
	AccuVIR	1762	0	6	1468	0	9	5	88	5	103	1
	HMMPolish	1761	0	2	1459	1	5	4	8	5	15	1

Cov_*: Coverage of outputs on all segments. This number reflects the completeness of the results by each polisher.