Table 1 Open in new tab Performance of... | Oxford Academic

Table 1

Open in new tab

Performance of predictions on the UnifyPDBFull 5-fold test datasets

	SPRI	EVmutation	FATHMM	LIST	PMUT	Polyphen-2	PROVEAN	Rhapsody
Completeness	1.0	0.740	0.987	0.987	0.990	0.987	0.987	0.930
Recall	0.919	0.908	0.868	0.755	0.732	0.875	0.842	0.826
Specificity	0.826	0.767	0.385	0.744	0.703	0.813	0.816	0.926
Precision	0.889	0.861	0.677	0.814	0.788	0.875	0.872	0.947
Accuracy	0.882	0.854	0.674	0.75	0.721	0.85	0.832	0.864
F-1 score	0.904	0.884	0.761	0.783	0.759	0.875	0.857	0.882
MCC score	0.752	0.688	0.293	0.492	0.429	0.688	0.654	0.732

	SPRI	EVmutation	FATHMM	LIST	PMUT	Polyphen-2	PROVEAN	Rhapsody
Completeness	1.0	0.740	0.987	0.987	0.990	0.987	0.987	0.930
Recall	0.919	0.908	0.868	0.755	0.732	0.875	0.842	0.826
Specificity	0.826	0.767	0.385	0.744	0.703	0.813	0.816	0.926
Precision	0.889	0.861	0.677	0.814	0.788	0.875	0.872	0.947
Accuracy	0.882	0.854	0.674	0.75	0.721	0.85	0.832	0.864
F-1 score	0.904	0.884	0.761	0.783	0.759	0.875	0.857	0.882
MCC score	0.752	0.688	0.293	0.492	0.429	0.688	0.654	0.732

Bold indicates the best metric.

Table 1

Open in new tab

Performance of predictions on the UnifyPDBFull 5-fold test datasets

	SPRI	EVmutation	FATHMM	LIST	PMUT	Polyphen-2	PROVEAN	Rhapsody
Completeness	1.0	0.740	0.987	0.987	0.990	0.987	0.987	0.930
Recall	0.919	0.908	0.868	0.755	0.732	0.875	0.842	0.826
Specificity	0.826	0.767	0.385	0.744	0.703	0.813	0.816	0.926
Precision	0.889	0.861	0.677	0.814	0.788	0.875	0.872	0.947
Accuracy	0.882	0.854	0.674	0.75	0.721	0.85	0.832	0.864
F-1 score	0.904	0.884	0.761	0.783	0.759	0.875	0.857	0.882
MCC score	0.752	0.688	0.293	0.492	0.429	0.688	0.654	0.732

	SPRI	EVmutation	FATHMM	LIST	PMUT	Polyphen-2	PROVEAN	Rhapsody
Completeness	1.0	0.740	0.987	0.987	0.990	0.987	0.987	0.930
Recall	0.919	0.908	0.868	0.755	0.732	0.875	0.842	0.826
Specificity	0.826	0.767	0.385	0.744	0.703	0.813	0.816	0.926
Precision	0.889	0.861	0.677	0.814	0.788	0.875	0.872	0.947
Accuracy	0.882	0.854	0.674	0.75	0.721	0.85	0.832	0.864
F-1 score	0.904	0.884	0.761	0.783	0.759	0.875	0.857	0.882
MCC score	0.752	0.688	0.293	0.492	0.429	0.688	0.654	0.732

Bold indicates the best metric.