Table 1. Open in new tab Pearson... | Oxford Academic

Table 1.

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Pearson correlation coefficients by subcellular fraction of various model and input settings. Numbers in bold are the maximum of their row

		Full-length RNA Inputs		Fixed-length Inputs (4 kb)				5Mer Inputs
Dataset	Compartment	RNATracker_seq	NoLSTM	RNATracker_seq	NoAttention	Seq+Struct	Seq×Struct	DNN-5Mer	NN-5Mer
CeFra-Seq	Cytosol	0.705	0.676	0.685	0.625	0.666	0.652	0.637	0.558
	Insoluble	0.641	0.626	0.619	0.557	0.604	0.591	0.552	0.478
	Membrane	0.540	0.509	0.469	0.306	0.451	0.409	0.421	0.384
	Nuclear	0.542	0.515	0.502	0.379	0.475	0.449	0.485	0.432
APEX-RIP	ER	0.626	0.554	0.485	0.150	0.469	0.394	0.407	0.368
	Mitocondria	0.482	0.449	0.423	0.139	0.376	0.320	0.292	0.224
	Cytosol	0.561	0.522	0.501	0.259	0.493	0.423	0.446	0.363
	Nuclear	0.456	0.402	0.397	0.235	0.384	0.338	0.332	0.238

		Full-length RNA Inputs		Fixed-length Inputs (4 kb)				5Mer Inputs
Dataset	Compartment	RNATracker_seq	NoLSTM	RNATracker_seq	NoAttention	Seq+Struct	Seq×Struct	DNN-5Mer	NN-5Mer
CeFra-Seq	Cytosol	0.705	0.676	0.685	0.625	0.666	0.652	0.637	0.558
	Insoluble	0.641	0.626	0.619	0.557	0.604	0.591	0.552	0.478
	Membrane	0.540	0.509	0.469	0.306	0.451	0.409	0.421	0.384
	Nuclear	0.542	0.515	0.502	0.379	0.475	0.449	0.485	0.432
APEX-RIP	ER	0.626	0.554	0.485	0.150	0.469	0.394	0.407	0.368
	Mitocondria	0.482	0.449	0.423	0.139	0.376	0.320	0.292	0.224
	Cytosol	0.561	0.522	0.501	0.259	0.493	0.423	0.446	0.363
	Nuclear	0.456	0.402	0.397	0.235	0.384	0.338	0.332	0.238

Note: NoLSTM and NoAttention are the two ablation tests without the bidirectional LSTM or the attention module.

Table 1.

Open in new tab

Pearson correlation coefficients by subcellular fraction of various model and input settings. Numbers in bold are the maximum of their row

		Full-length RNA Inputs		Fixed-length Inputs (4 kb)				5Mer Inputs
Dataset	Compartment	RNATracker_seq	NoLSTM	RNATracker_seq	NoAttention	Seq+Struct	Seq×Struct	DNN-5Mer	NN-5Mer
CeFra-Seq	Cytosol	0.705	0.676	0.685	0.625	0.666	0.652	0.637	0.558
	Insoluble	0.641	0.626	0.619	0.557	0.604	0.591	0.552	0.478
	Membrane	0.540	0.509	0.469	0.306	0.451	0.409	0.421	0.384
	Nuclear	0.542	0.515	0.502	0.379	0.475	0.449	0.485	0.432
APEX-RIP	ER	0.626	0.554	0.485	0.150	0.469	0.394	0.407	0.368
	Mitocondria	0.482	0.449	0.423	0.139	0.376	0.320	0.292	0.224
	Cytosol	0.561	0.522	0.501	0.259	0.493	0.423	0.446	0.363
	Nuclear	0.456	0.402	0.397	0.235	0.384	0.338	0.332	0.238

		Full-length RNA Inputs		Fixed-length Inputs (4 kb)				5Mer Inputs
Dataset	Compartment	RNATracker_seq	NoLSTM	RNATracker_seq	NoAttention	Seq+Struct	Seq×Struct	DNN-5Mer	NN-5Mer
CeFra-Seq	Cytosol	0.705	0.676	0.685	0.625	0.666	0.652	0.637	0.558
	Insoluble	0.641	0.626	0.619	0.557	0.604	0.591	0.552	0.478
	Membrane	0.540	0.509	0.469	0.306	0.451	0.409	0.421	0.384
	Nuclear	0.542	0.515	0.502	0.379	0.475	0.449	0.485	0.432
APEX-RIP	ER	0.626	0.554	0.485	0.150	0.469	0.394	0.407	0.368
	Mitocondria	0.482	0.449	0.423	0.139	0.376	0.320	0.292	0.224
	Cytosol	0.561	0.522	0.501	0.259	0.493	0.423	0.446	0.363
	Nuclear	0.456	0.402	0.397	0.235	0.384	0.338	0.332	0.238

Note: NoLSTM and NoAttention are the two ablation tests without the bidirectional LSTM or the attention module.