Node types and properties in the Neo4j database after pathway reconstruction.
| Node label . | Properties . | Description . |
|---|---|---|
| Compound | ID, chebiID, compoundName, textname, sentences and PMID_Tnb | Compound node |
| Protein | Id, uniProtEntryName, uniprotGeneName, uniprotID, uniprotProteinName, species, textname, PMID_Tnb and sentences | Protein node, also enzyme nodes if they catalyze a reaction |
| Enzyme | Id, uniProtEntryName, uniprotID, species, textname, sentences, PMID_Tnb, ECs and synonyms | Enzyme node |
| Compressed | Id, uniprotIDs, Ecs, CompoundNames, chebiIDs and sentences | Compressed nodes and clusters of molecules |
| Node label . | Properties . | Description . |
|---|---|---|
| Compound | ID, chebiID, compoundName, textname, sentences and PMID_Tnb | Compound node |
| Protein | Id, uniProtEntryName, uniprotGeneName, uniprotID, uniprotProteinName, species, textname, PMID_Tnb and sentences | Protein node, also enzyme nodes if they catalyze a reaction |
| Enzyme | Id, uniProtEntryName, uniprotID, species, textname, sentences, PMID_Tnb, ECs and synonyms | Enzyme node |
| Compressed | Id, uniprotIDs, Ecs, CompoundNames, chebiIDs and sentences | Compressed nodes and clusters of molecules |
Node types and properties in the Neo4j database after pathway reconstruction.
| Node label . | Properties . | Description . |
|---|---|---|
| Compound | ID, chebiID, compoundName, textname, sentences and PMID_Tnb | Compound node |
| Protein | Id, uniProtEntryName, uniprotGeneName, uniprotID, uniprotProteinName, species, textname, PMID_Tnb and sentences | Protein node, also enzyme nodes if they catalyze a reaction |
| Enzyme | Id, uniProtEntryName, uniprotID, species, textname, sentences, PMID_Tnb, ECs and synonyms | Enzyme node |
| Compressed | Id, uniprotIDs, Ecs, CompoundNames, chebiIDs and sentences | Compressed nodes and clusters of molecules |
| Node label . | Properties . | Description . |
|---|---|---|
| Compound | ID, chebiID, compoundName, textname, sentences and PMID_Tnb | Compound node |
| Protein | Id, uniProtEntryName, uniprotGeneName, uniprotID, uniprotProteinName, species, textname, PMID_Tnb and sentences | Protein node, also enzyme nodes if they catalyze a reaction |
| Enzyme | Id, uniProtEntryName, uniprotID, species, textname, sentences, PMID_Tnb, ECs and synonyms | Enzyme node |
| Compressed | Id, uniprotIDs, Ecs, CompoundNames, chebiIDs and sentences | Compressed nodes and clusters of molecules |
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