Table 1.
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Global statistics of Prunus mongolica genome assembly and annotation

ParameterSize or number
Estimate of genome size (survey), Mb226,470,058
Assembled genome size, bp233,169,053
Total length of contigs, bp233,168,353
Total number of contigs91
N50 of contigs, bp24,328,480
Largest contig, bp30,055,353
Total length of scaffolds, bp233,169,053
Total number of scaffolds84
N50 of scaffolds, bp26,540,977
Largest scaffold, bp47,189,607
GC content, %38.20
Complete CEGMA, %98.47
Complete BUSCOs, %98.76
Total length of repeat, bp88,539,904
Repeat density, %37.97
Long terminal repeat (LTR) density, %17.92
Microsatellite repeat density, %0.94
Number of protein-coding genes23,798
Number of annotated genes23,702
Number of rRNA832
Number of tRNA625
Number of miRNAs217
Number of snRNAs283
Number of snoRNAs491
Number of pseudogenes161
ParameterSize or number
Estimate of genome size (survey), Mb226,470,058
Assembled genome size, bp233,169,053
Total length of contigs, bp233,168,353
Total number of contigs91
N50 of contigs, bp24,328,480
Largest contig, bp30,055,353
Total length of scaffolds, bp233,169,053
Total number of scaffolds84
N50 of scaffolds, bp26,540,977
Largest scaffold, bp47,189,607
GC content, %38.20
Complete CEGMA, %98.47
Complete BUSCOs, %98.76
Total length of repeat, bp88,539,904
Repeat density, %37.97
Long terminal repeat (LTR) density, %17.92
Microsatellite repeat density, %0.94
Number of protein-coding genes23,798
Number of annotated genes23,702
Number of rRNA832
Number of tRNA625
Number of miRNAs217
Number of snRNAs283
Number of snoRNAs491
Number of pseudogenes161
Table 1.
Open in new tab

Global statistics of Prunus mongolica genome assembly and annotation

ParameterSize or number
Estimate of genome size (survey), Mb226,470,058
Assembled genome size, bp233,169,053
Total length of contigs, bp233,168,353
Total number of contigs91
N50 of contigs, bp24,328,480
Largest contig, bp30,055,353
Total length of scaffolds, bp233,169,053
Total number of scaffolds84
N50 of scaffolds, bp26,540,977
Largest scaffold, bp47,189,607
GC content, %38.20
Complete CEGMA, %98.47
Complete BUSCOs, %98.76
Total length of repeat, bp88,539,904
Repeat density, %37.97
Long terminal repeat (LTR) density, %17.92
Microsatellite repeat density, %0.94
Number of protein-coding genes23,798
Number of annotated genes23,702
Number of rRNA832
Number of tRNA625
Number of miRNAs217
Number of snRNAs283
Number of snoRNAs491
Number of pseudogenes161
ParameterSize or number
Estimate of genome size (survey), Mb226,470,058
Assembled genome size, bp233,169,053
Total length of contigs, bp233,168,353
Total number of contigs91
N50 of contigs, bp24,328,480
Largest contig, bp30,055,353
Total length of scaffolds, bp233,169,053
Total number of scaffolds84
N50 of scaffolds, bp26,540,977
Largest scaffold, bp47,189,607
GC content, %38.20
Complete CEGMA, %98.47
Complete BUSCOs, %98.76
Total length of repeat, bp88,539,904
Repeat density, %37.97
Long terminal repeat (LTR) density, %17.92
Microsatellite repeat density, %0.94
Number of protein-coding genes23,798
Number of annotated genes23,702
Number of rRNA832
Number of tRNA625
Number of miRNAs217
Number of snRNAs283
Number of snoRNAs491
Number of pseudogenes161
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