| Notation . | Definition . |
|---|---|
| |$\mathcal{R}$|/|$\mathcal{X}$| | Collection of relational/attribute data matrices |
| |$\mathbf{R}_{i j}$|/|$\mathbf{\widehat{R}}_{i j}$| | Initial/Reconstructed relational data matrices between |$i$|-th and |$j$|-th object type |
| |$\mathbf{X}_{i t}$|/|$\mathbf{\widehat{X}}_{i t}$| | Initial/Reconstructed |$t$|-th attribute data matrix of the |$i$|-th object type |
| |$\mathbf{P}$|/|$\widehat{\mathbf{P}}$| | Initial/Reconstructed pathway interaction network |
| |$\mathbf{A}$|/|$\widehat{\mathbf{A}}$| | Initial/Weighted gene-pathway relational matrix |
| |$\mathbf{G}_{i}$| | Embedding vector of the |$i$|-th object type |
| |$\mathbf{U}_{it}$| | Embedding vector of |$t$|-th attribute type of the |$i$|-th object type |
| |$\mathbf{M}$|/|$\mathbf{M}^{p}$| | Mutation data matrix of all genes/pathway |$p$| |
| Notation . | Definition . |
|---|---|
| |$\mathcal{R}$|/|$\mathcal{X}$| | Collection of relational/attribute data matrices |
| |$\mathbf{R}_{i j}$|/|$\mathbf{\widehat{R}}_{i j}$| | Initial/Reconstructed relational data matrices between |$i$|-th and |$j$|-th object type |
| |$\mathbf{X}_{i t}$|/|$\mathbf{\widehat{X}}_{i t}$| | Initial/Reconstructed |$t$|-th attribute data matrix of the |$i$|-th object type |
| |$\mathbf{P}$|/|$\widehat{\mathbf{P}}$| | Initial/Reconstructed pathway interaction network |
| |$\mathbf{A}$|/|$\widehat{\mathbf{A}}$| | Initial/Weighted gene-pathway relational matrix |
| |$\mathbf{G}_{i}$| | Embedding vector of the |$i$|-th object type |
| |$\mathbf{U}_{it}$| | Embedding vector of |$t$|-th attribute type of the |$i$|-th object type |
| |$\mathbf{M}$|/|$\mathbf{M}^{p}$| | Mutation data matrix of all genes/pathway |$p$| |
| Notation . | Definition . |
|---|---|
| |$\mathcal{R}$|/|$\mathcal{X}$| | Collection of relational/attribute data matrices |
| |$\mathbf{R}_{i j}$|/|$\mathbf{\widehat{R}}_{i j}$| | Initial/Reconstructed relational data matrices between |$i$|-th and |$j$|-th object type |
| |$\mathbf{X}_{i t}$|/|$\mathbf{\widehat{X}}_{i t}$| | Initial/Reconstructed |$t$|-th attribute data matrix of the |$i$|-th object type |
| |$\mathbf{P}$|/|$\widehat{\mathbf{P}}$| | Initial/Reconstructed pathway interaction network |
| |$\mathbf{A}$|/|$\widehat{\mathbf{A}}$| | Initial/Weighted gene-pathway relational matrix |
| |$\mathbf{G}_{i}$| | Embedding vector of the |$i$|-th object type |
| |$\mathbf{U}_{it}$| | Embedding vector of |$t$|-th attribute type of the |$i$|-th object type |
| |$\mathbf{M}$|/|$\mathbf{M}^{p}$| | Mutation data matrix of all genes/pathway |$p$| |
| Notation . | Definition . |
|---|---|
| |$\mathcal{R}$|/|$\mathcal{X}$| | Collection of relational/attribute data matrices |
| |$\mathbf{R}_{i j}$|/|$\mathbf{\widehat{R}}_{i j}$| | Initial/Reconstructed relational data matrices between |$i$|-th and |$j$|-th object type |
| |$\mathbf{X}_{i t}$|/|$\mathbf{\widehat{X}}_{i t}$| | Initial/Reconstructed |$t$|-th attribute data matrix of the |$i$|-th object type |
| |$\mathbf{P}$|/|$\widehat{\mathbf{P}}$| | Initial/Reconstructed pathway interaction network |
| |$\mathbf{A}$|/|$\widehat{\mathbf{A}}$| | Initial/Weighted gene-pathway relational matrix |
| |$\mathbf{G}_{i}$| | Embedding vector of the |$i$|-th object type |
| |$\mathbf{U}_{it}$| | Embedding vector of |$t$|-th attribute type of the |$i$|-th object type |
| |$\mathbf{M}$|/|$\mathbf{M}^{p}$| | Mutation data matrix of all genes/pathway |$p$| |
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