Table 2.

Summary of the competitive index of the V. cholerae deletion mutants compared to WT during growth in sub-MIC antibiotics.

GeneTN-seqTOBGENEcTN-seqCIPCMTRMCRBTCL
TOBfitnessfitnessTOBCIPfitnessfitnessfitnessfitnessfitness
tgt---+/--+-
gidA/mnmG(+)++--+--
dusA++
dusB++++-+-
miaB---N/A--
truA(+)--N/A(-)---
truB(-)--N/A(-)+
truCN/A-
trmA-N/A-
trmB+N/A(+)+
trmE/mnmE+-(+)++-
trmH+++N/A-
trmKN/A
rlmI(-)--N/A--
rsmB---N/A(-)--
rsmC++++
rsmD--++
rsmF---N/A(-)++-
rsuA---++
rluB++++(+)--
rluD+--N/A+---
rluE-++N/A(-)----
rlmN+++N/A-++
GeneTN-seqTOBGENEcTN-seqCIPCMTRMCRBTCL
TOBfitnessfitnessTOBCIPfitnessfitnessfitnessfitnessfitness
tgt---+/--+-
gidA/mnmG(+)++--+--
dusA++
dusB++++-+-
miaB---N/A--
truA(+)--N/A(-)---
truB(-)--N/A(-)+
truCN/A-
trmA-N/A-
trmB+N/A(+)+
trmE/mnmE+-(+)++-
trmH+++N/A-
trmKN/A
rlmI(-)--N/A--
rsmB---N/A(-)--
rsmC++++
rsmD--++
rsmF---N/A(-)++-
rsuA---++
rluB++++(+)--
rluD+--N/A+---
rluE-++N/A(-)----
rlmN+++N/A-++

“-” means that deletion of the gene decreases fitness (> 2-fold change). “+” means deletion of the gene increases fitness (> 2-fold change). Parentheses indicate that the P-value was not significant. An empty cell means that no significant effect of deletion was observed. “Ec TOB:” column summarizing results from Escherichia coli growth curves in sub-MIC TOB (Fig. 4), “N/A” means that the corresponding mutant was not tested in E. coli.

Table 2.

Summary of the competitive index of the V. cholerae deletion mutants compared to WT during growth in sub-MIC antibiotics.

GeneTN-seqTOBGENEcTN-seqCIPCMTRMCRBTCL
TOBfitnessfitnessTOBCIPfitnessfitnessfitnessfitnessfitness
tgt---+/--+-
gidA/mnmG(+)++--+--
dusA++
dusB++++-+-
miaB---N/A--
truA(+)--N/A(-)---
truB(-)--N/A(-)+
truCN/A-
trmA-N/A-
trmB+N/A(+)+
trmE/mnmE+-(+)++-
trmH+++N/A-
trmKN/A
rlmI(-)--N/A--
rsmB---N/A(-)--
rsmC++++
rsmD--++
rsmF---N/A(-)++-
rsuA---++
rluB++++(+)--
rluD+--N/A+---
rluE-++N/A(-)----
rlmN+++N/A-++
GeneTN-seqTOBGENEcTN-seqCIPCMTRMCRBTCL
TOBfitnessfitnessTOBCIPfitnessfitnessfitnessfitnessfitness
tgt---+/--+-
gidA/mnmG(+)++--+--
dusA++
dusB++++-+-
miaB---N/A--
truA(+)--N/A(-)---
truB(-)--N/A(-)+
truCN/A-
trmA-N/A-
trmB+N/A(+)+
trmE/mnmE+-(+)++-
trmH+++N/A-
trmKN/A
rlmI(-)--N/A--
rsmB---N/A(-)--
rsmC++++
rsmD--++
rsmF---N/A(-)++-
rsuA---++
rluB++++(+)--
rluD+--N/A+---
rluE-++N/A(-)----
rlmN+++N/A-++

“-” means that deletion of the gene decreases fitness (> 2-fold change). “+” means deletion of the gene increases fitness (> 2-fold change). Parentheses indicate that the P-value was not significant. An empty cell means that no significant effect of deletion was observed. “Ec TOB:” column summarizing results from Escherichia coli growth curves in sub-MIC TOB (Fig. 4), “N/A” means that the corresponding mutant was not tested in E. coli.

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