Summary of the competitive index of the V. cholerae deletion mutants compared to WT during growth in sub-MIC antibiotics.
Gene . | TN-seq . | TOB . | GEN . | Ec . | TN-seq . | CIP . | CM . | TRM . | CRB . | TCL . |
---|---|---|---|---|---|---|---|---|---|---|
. | TOB . | fitness . | fitness . | TOB . | CIP . | fitness . | fitness . | fitness . | fitness . | fitness . |
tgt | - | - | - | +/- | - | + | - | |||
gidA/mnmG | (+) | + | + | - | - | + | - | - | ||
dusA | + | + | ||||||||
dusB | + | + | + | + | - | + | - | |||
miaB | - | - | - | N/A | - | - | ||||
truA | (+) | - | - | N/A | (-) | - | - | - | ||
truB | (-) | - | - | N/A | (-) | + | ||||
truC | N/A | - | ||||||||
trmA | - | N/A | - | |||||||
trmB | + | N/A | (+) | + | ||||||
trmE/mnmE | + | - | (+) | + | + | - | ||||
trmH | + | + | + | N/A | - | |||||
trmK | N/A | |||||||||
rlmI | (-) | - | - | N/A | - | - | ||||
rsmB | - | - | - | N/A | (-) | - | - | |||
rsmC | + | + | + | + | ||||||
rsmD | - | - | + | + | ||||||
rsmF | - | - | - | N/A | (-) | + | + | - | ||
rsuA | - | - | - | + | + | |||||
rluB | + | + | + | + | (+) | - | - | |||
rluD | + | - | - | N/A | + | - | - | - | ||
rluE | - | + | + | N/A | (-) | - | - | - | - | |
rlmN | + | + | + | N/A | - | + | + |
Gene . | TN-seq . | TOB . | GEN . | Ec . | TN-seq . | CIP . | CM . | TRM . | CRB . | TCL . |
---|---|---|---|---|---|---|---|---|---|---|
. | TOB . | fitness . | fitness . | TOB . | CIP . | fitness . | fitness . | fitness . | fitness . | fitness . |
tgt | - | - | - | +/- | - | + | - | |||
gidA/mnmG | (+) | + | + | - | - | + | - | - | ||
dusA | + | + | ||||||||
dusB | + | + | + | + | - | + | - | |||
miaB | - | - | - | N/A | - | - | ||||
truA | (+) | - | - | N/A | (-) | - | - | - | ||
truB | (-) | - | - | N/A | (-) | + | ||||
truC | N/A | - | ||||||||
trmA | - | N/A | - | |||||||
trmB | + | N/A | (+) | + | ||||||
trmE/mnmE | + | - | (+) | + | + | - | ||||
trmH | + | + | + | N/A | - | |||||
trmK | N/A | |||||||||
rlmI | (-) | - | - | N/A | - | - | ||||
rsmB | - | - | - | N/A | (-) | - | - | |||
rsmC | + | + | + | + | ||||||
rsmD | - | - | + | + | ||||||
rsmF | - | - | - | N/A | (-) | + | + | - | ||
rsuA | - | - | - | + | + | |||||
rluB | + | + | + | + | (+) | - | - | |||
rluD | + | - | - | N/A | + | - | - | - | ||
rluE | - | + | + | N/A | (-) | - | - | - | - | |
rlmN | + | + | + | N/A | - | + | + |
“-” means that deletion of the gene decreases fitness (> 2-fold change). “+” means deletion of the gene increases fitness (> 2-fold change). Parentheses indicate that the P-value was not significant. An empty cell means that no significant effect of deletion was observed. “Ec TOB:” column summarizing results from Escherichia coli growth curves in sub-MIC TOB (Fig. 4), “N/A” means that the corresponding mutant was not tested in E. coli.
Summary of the competitive index of the V. cholerae deletion mutants compared to WT during growth in sub-MIC antibiotics.
Gene . | TN-seq . | TOB . | GEN . | Ec . | TN-seq . | CIP . | CM . | TRM . | CRB . | TCL . |
---|---|---|---|---|---|---|---|---|---|---|
. | TOB . | fitness . | fitness . | TOB . | CIP . | fitness . | fitness . | fitness . | fitness . | fitness . |
tgt | - | - | - | +/- | - | + | - | |||
gidA/mnmG | (+) | + | + | - | - | + | - | - | ||
dusA | + | + | ||||||||
dusB | + | + | + | + | - | + | - | |||
miaB | - | - | - | N/A | - | - | ||||
truA | (+) | - | - | N/A | (-) | - | - | - | ||
truB | (-) | - | - | N/A | (-) | + | ||||
truC | N/A | - | ||||||||
trmA | - | N/A | - | |||||||
trmB | + | N/A | (+) | + | ||||||
trmE/mnmE | + | - | (+) | + | + | - | ||||
trmH | + | + | + | N/A | - | |||||
trmK | N/A | |||||||||
rlmI | (-) | - | - | N/A | - | - | ||||
rsmB | - | - | - | N/A | (-) | - | - | |||
rsmC | + | + | + | + | ||||||
rsmD | - | - | + | + | ||||||
rsmF | - | - | - | N/A | (-) | + | + | - | ||
rsuA | - | - | - | + | + | |||||
rluB | + | + | + | + | (+) | - | - | |||
rluD | + | - | - | N/A | + | - | - | - | ||
rluE | - | + | + | N/A | (-) | - | - | - | - | |
rlmN | + | + | + | N/A | - | + | + |
Gene . | TN-seq . | TOB . | GEN . | Ec . | TN-seq . | CIP . | CM . | TRM . | CRB . | TCL . |
---|---|---|---|---|---|---|---|---|---|---|
. | TOB . | fitness . | fitness . | TOB . | CIP . | fitness . | fitness . | fitness . | fitness . | fitness . |
tgt | - | - | - | +/- | - | + | - | |||
gidA/mnmG | (+) | + | + | - | - | + | - | - | ||
dusA | + | + | ||||||||
dusB | + | + | + | + | - | + | - | |||
miaB | - | - | - | N/A | - | - | ||||
truA | (+) | - | - | N/A | (-) | - | - | - | ||
truB | (-) | - | - | N/A | (-) | + | ||||
truC | N/A | - | ||||||||
trmA | - | N/A | - | |||||||
trmB | + | N/A | (+) | + | ||||||
trmE/mnmE | + | - | (+) | + | + | - | ||||
trmH | + | + | + | N/A | - | |||||
trmK | N/A | |||||||||
rlmI | (-) | - | - | N/A | - | - | ||||
rsmB | - | - | - | N/A | (-) | - | - | |||
rsmC | + | + | + | + | ||||||
rsmD | - | - | + | + | ||||||
rsmF | - | - | - | N/A | (-) | + | + | - | ||
rsuA | - | - | - | + | + | |||||
rluB | + | + | + | + | (+) | - | - | |||
rluD | + | - | - | N/A | + | - | - | - | ||
rluE | - | + | + | N/A | (-) | - | - | - | - | |
rlmN | + | + | + | N/A | - | + | + |
“-” means that deletion of the gene decreases fitness (> 2-fold change). “+” means deletion of the gene increases fitness (> 2-fold change). Parentheses indicate that the P-value was not significant. An empty cell means that no significant effect of deletion was observed. “Ec TOB:” column summarizing results from Escherichia coli growth curves in sub-MIC TOB (Fig. 4), “N/A” means that the corresponding mutant was not tested in E. coli.
This PDF is available to Subscribers Only
View Article Abstract & Purchase OptionsFor full access to this pdf, sign in to an existing account, or purchase an annual subscription.